BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

232 related articles for article (PubMed ID: 17053090)

  • 1. A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1.
    Jin VX; Rabinovich A; Squazzo SL; Green R; Farnham PJ
    Genome Res; 2006 Dec; 16(12):1585-95. PubMed ID: 17053090
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Transcriptional regulation of the mouse PNRC2 promoter by the nuclear factor Y (NFY) and E2F1.
    Zhou D; Masri S; Ye JJ; Chen S
    Gene; 2005 Nov; 361():89-100. PubMed ID: 16181749
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome.
    Bieda M; Xu X; Singer MA; Green R; Farnham PJ
    Genome Res; 2006 May; 16(5):595-605. PubMed ID: 16606705
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
    Sun H; Palaniswamy SK; Pohar TT; Jin VX; Huang TH; Davuluri RV
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D98-103. PubMed ID: 16381984
    [TBL] [Abstract][Full Text] [Related]  

  • 5. E2F-HDAC complexes negatively regulate the tumor suppressor gene ARHI in breast cancer.
    Lu Z; Luo RZ; Peng H; Huang M; Nishmoto A; Hunt KK; Helin K; Liao WS; Yu Y
    Oncogene; 2006 Jan; 25(2):230-9. PubMed ID: 16158053
    [TBL] [Abstract][Full Text] [Related]  

  • 6. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
    Niu M; Tabari ES; Su Z
    BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An integrated approach to identifying cis-regulatory modules in the human genome.
    Won KJ; Agarwal S; Shen L; Shoemaker R; Ren B; Wang W
    PLoS One; 2009; 4(5):e5501. PubMed ID: 19434238
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.
    Hosseinpour B; Bakhtiarizadeh MR; Khosravi P; Ebrahimie E
    Gene; 2013 Dec; 531(2):212-9. PubMed ID: 24042128
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome.
    Hon G; Ren B; Wang W
    PLoS Comput Biol; 2008 Oct; 4(10):e1000201. PubMed ID: 18927605
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Identifying estrogen receptor alpha target genes using integrated computational genomics and chromatin immunoprecipitation microarray.
    Jin VX; Leu YW; Liyanarachchi S; Sun H; Fan M; Nephew KP; Huang TH; Davuluri RV
    Nucleic Acids Res; 2004; 32(22):6627-35. PubMed ID: 15608294
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Transcription factor E2F1 is a potent transactivator of the insulin-like growth factor-I receptor (IGF-IR) gene.
    Schayek H; Bentov I; Rotem I; Pasmanik-Chor M; Ginsberg D; Plymate SR; Werner H
    Growth Horm IGF Res; 2010 Feb; 20(1):68-72. PubMed ID: 19703789
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Repression of interferon regulatory factor 3 by the Epstein-Barr virus immediate-early protein Rta is mediated through E2F1 in HeLa cells.
    Zhu LH; Gao S; Jin R; Zhuang LL; Jiang L; Qiu LZ; Xu HG; Zhou GP
    Mol Med Rep; 2014 Apr; 9(4):1453-9. PubMed ID: 24535579
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A comprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members.
    Xu X; Bieda M; Jin VX; Rabinovich A; Oberley MJ; Green R; Farnham PJ
    Genome Res; 2007 Nov; 17(11):1550-61. PubMed ID: 17908821
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Integration of cap analysis of gene expression and chromatin immunoprecipitation analysis on array reveals genome-wide androgen receptor signaling in prostate cancer cells.
    Takayama K; Tsutsumi S; Katayama S; Okayama T; Horie-Inoue K; Ikeda K; Urano T; Kawazu C; Hasegawa A; Ikeo K; Gojyobori T; Ouchi Y; Hayashizaki Y; Aburatani H; Inoue S
    Oncogene; 2011 Feb; 30(5):619-30. PubMed ID: 20890304
    [TBL] [Abstract][Full Text] [Related]  

  • 15. E2F in vivo binding specificity: comparison of consensus versus nonconsensus binding sites.
    Rabinovich A; Jin VX; Rabinovich R; Xu X; Farnham PJ
    Genome Res; 2008 Nov; 18(11):1763-77. PubMed ID: 18836037
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparative genomics on MCM8 orthologous genes reveals the transcriptional regulation by transcription factor E2F.
    Hayashi R; Goto Y; Haga A; Kobayashi D; Ikeda R; Yoshida K
    Gene; 2006 Feb; 367():126-34. PubMed ID: 16325355
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Combining chromatin immunoprecipitation and oligonucleotide tiling arrays (ChIP-Chip) for functional genomic studies.
    Eeckhoute J; Lupien M; Brown M
    Methods Mol Biol; 2009; 556():155-64. PubMed ID: 19488877
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ChIP-enriched in silico targets (ChEST), a ChIP-on-chip approach applied to analyzing skeletal muscle genes.
    Junion G; Jagla K
    Methods Mol Biol; 2012; 798():543-53. PubMed ID: 22130860
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A novel pairwise comparison method for in silico discovery of statistically significant cis-regulatory elements in eukaryotic promoter regions: application to Arabidopsis.
    Shamloo-Dashtpagerdi R; Razi H; Aliakbari M; Lindlöf A; Ebrahimi M; Ebrahimie E
    J Theor Biol; 2015 Jan; 364():364-76. PubMed ID: 25303887
    [TBL] [Abstract][Full Text] [Related]  

  • 20. microRNA‑202 suppresses MYCN expression under the control of E2F1 in the neuroblastoma cell line LAN‑5.
    Li YG; He JH; Yu L; Hang ZP; Li W; Shun WH; Huang GX
    Mol Med Rep; 2014 Feb; 9(2):541-6. PubMed ID: 24337320
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.