255 related articles for article (PubMed ID: 17059591)
1. A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database.
Katz S; Irizarry RA; Lin X; Tripputi M; Porter MW
BMC Bioinformatics; 2006 Oct; 7():464. PubMed ID: 17059591
[TBL] [Abstract][Full Text] [Related]
2. Tissue-specific RMA models to incrementally normalize Affymetrix GeneChip data.
Eschrich SA; Hoerter AM; Bloom GC; Fenstermacher DA
Annu Int Conf IEEE Eng Med Biol Soc; 2008; 2008():2419-22. PubMed ID: 19163190
[TBL] [Abstract][Full Text] [Related]
3. A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays.
Ge H; Cheng C; Li LM
BMC Bioinformatics; 2008 Apr; 9():194. PubMed ID: 18410691
[TBL] [Abstract][Full Text] [Related]
4. A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
Alberts R; Terpstra P; Hardonk M; Bystrykh LV; de Haan G; Breitling R; Nap JP; Jansen RC
BMC Bioinformatics; 2007 Apr; 8():132. PubMed ID: 17448222
[TBL] [Abstract][Full Text] [Related]
5. AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
Liu H; Zeeberg BR; Qu G; Koru AG; Ferrucci A; Kahn A; Ryan MC; Nuhanovic A; Munson PJ; Reinhold WC; Kane DW; Weinstein JN
Bioinformatics; 2007 Sep; 23(18):2385-90. PubMed ID: 17660211
[TBL] [Abstract][Full Text] [Related]
6. Empirical Bayes models for multiple probe type microarrays at the probe level.
Astrand M; Mostad P; Rudemo M
BMC Bioinformatics; 2008 Mar; 9():156. PubMed ID: 18366694
[TBL] [Abstract][Full Text] [Related]
7. A new summarization method for Affymetrix probe level data.
Hochreiter S; Clevert DA; Obermayer K
Bioinformatics; 2006 Apr; 22(8):943-9. PubMed ID: 16473874
[TBL] [Abstract][Full Text] [Related]
8. Assessing the need for sequence-based normalization in tiling microarray experiments.
Royce TE; Rozowsky JS; Gerstein MB
Bioinformatics; 2007 Apr; 23(8):988-97. PubMed ID: 17387113
[TBL] [Abstract][Full Text] [Related]
9. A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.
Du J; Rozowsky JS; Korbel JO; Zhang ZD; Royce TE; Schultz MH; Snyder M; Gerstein M
Bioinformatics; 2006 Dec; 22(24):3016-24. PubMed ID: 17038339
[TBL] [Abstract][Full Text] [Related]
10. Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.
Datta S; Datta S
BMC Bioinformatics; 2006 Aug; 7():397. PubMed ID: 16945146
[TBL] [Abstract][Full Text] [Related]
11. CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays.
Kong SW; Hwang KB; Kim RD; Zhang BT; Greenberg SA; Kohane IS; Park PJ
Bioinformatics; 2005 May; 21(9):2116-7. PubMed ID: 15684227
[TBL] [Abstract][Full Text] [Related]
12. Dynamic variable selection in SNP genotype autocalling from APEX microarray data.
Podder M; Welch WJ; Zamar RH; Tebbutt SJ
BMC Bioinformatics; 2006 Nov; 7():521. PubMed ID: 17137502
[TBL] [Abstract][Full Text] [Related]
13. affy--analysis of Affymetrix GeneChip data at the probe level.
Gautier L; Cope L; Bolstad BM; Irizarry RA
Bioinformatics; 2004 Feb; 20(3):307-15. PubMed ID: 14960456
[TBL] [Abstract][Full Text] [Related]
14. Different effects of the probe summarization algorithms PLIER and RMA on high-level analysis of Affymetrix exon arrays.
Qu Y; He F; Chen Y
BMC Bioinformatics; 2010 Apr; 11():211. PubMed ID: 20426803
[TBL] [Abstract][Full Text] [Related]
15. Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data.
Yu H; Wang F; Tu K; Xie L; Li YY; Li YX
BMC Bioinformatics; 2007 Jun; 8():194. PubMed ID: 17559689
[TBL] [Abstract][Full Text] [Related]
16. Frozen robust multiarray analysis (fRMA).
McCall MN; Bolstad BM; Irizarry RA
Biostatistics; 2010 Apr; 11(2):242-53. PubMed ID: 20097884
[TBL] [Abstract][Full Text] [Related]
17. Combining gene expression data from different generations of oligonucleotide arrays.
Hwang KB; Kong SW; Greenberg SA; Park PJ
BMC Bioinformatics; 2004 Oct; 5():159. PubMed ID: 15504239
[TBL] [Abstract][Full Text] [Related]
18. Identification and utilization of inter-species conserved (ISC) probesets on Affymetrix human GeneChip platforms for the optimization of the assessment of expression patterns in non human primate (NHP) samples.
Wang Z; Lewis MG; Nau ME; Arnold A; Vahey MT
BMC Bioinformatics; 2004 Oct; 5():165. PubMed ID: 15507140
[TBL] [Abstract][Full Text] [Related]
19. Correlation test to assess low-level processing of high-density oligonucleotide microarray data.
Ploner A; Miller LD; Hall P; Bergh J; Pawitan Y
BMC Bioinformatics; 2005 Mar; 6():80. PubMed ID: 15799785
[TBL] [Abstract][Full Text] [Related]
20. A Distribution-Free Convolution Model for background correction of oligonucleotide microarray data.
Chen Z; McGee M; Liu Q; Kong M; Deng Y; Scheuermann RH
BMC Genomics; 2009 Jul; 10 Suppl 1(Suppl 1):S19. PubMed ID: 19594878
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]