169 related articles for article (PubMed ID: 17085850)
1. Efficient parameterized algorithms for biopolymer structure-sequence alignment.
Song Y; Liu C; Huang X; Malmberg RL; Xu Y; Cai L
IEEE/ACM Trans Comput Biol Bioinform; 2006; 3(4):423-32. PubMed ID: 17085850
[TBL] [Abstract][Full Text] [Related]
2. Tree decomposition based fast search of RNA structures including pseudoknots in genomes.
Song Y; Liu C; Malmberg R; Pan F; Cai L
Proc IEEE Comput Syst Bioinform Conf; 2005; ():223-34. PubMed ID: 16447980
[TBL] [Abstract][Full Text] [Related]
3. Local sequence-structure motifs in RNA.
Backofen R; Will S
J Bioinform Comput Biol; 2004 Dec; 2(4):681-98. PubMed ID: 15617161
[TBL] [Abstract][Full Text] [Related]
4. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
[TBL] [Abstract][Full Text] [Related]
5. Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
Bellamy-Royds AB; Turcotte M
BMC Bioinformatics; 2007 Jun; 8():190. PubMed ID: 17559658
[TBL] [Abstract][Full Text] [Related]
6. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
Xu X; Ji Y; Stormo GD
Bioinformatics; 2007 Aug; 23(15):1883-91. PubMed ID: 17537756
[TBL] [Abstract][Full Text] [Related]
7. Multiple RNA structure alignment.
Wang Z; Zhang K
J Bioinform Comput Biol; 2005 Jun; 3(3):609-26. PubMed ID: 16108086
[TBL] [Abstract][Full Text] [Related]
8. A new distance for high level RNA secondary structure comparison.
Allali J; Sagot MF
IEEE/ACM Trans Comput Biol Bioinform; 2005; 2(1):3-14. PubMed ID: 17044160
[TBL] [Abstract][Full Text] [Related]
9. Ensemble-based RNA secondary structure characterization.
Crozier SP; Garner HR
IEEE Eng Med Biol Mag; 2007; 26(1):72-86. PubMed ID: 17278775
[No Abstract] [Full Text] [Related]
10. StructMiner: a tool for alignment and detection of conserved secondary structure.
Yang Q; Blanchette M
Genome Inform; 2004; 15(2):102-11. PubMed ID: 15706496
[TBL] [Abstract][Full Text] [Related]
11. Multiple RNA structure alignment.
Wang Z; Zhang K
Proc IEEE Comput Syst Bioinform Conf; 2004; ():246-54. PubMed ID: 16448018
[TBL] [Abstract][Full Text] [Related]
12. INFO-RNA--a fast approach to inverse RNA folding.
Busch A; Backofen R
Bioinformatics; 2006 Aug; 22(15):1823-31. PubMed ID: 16709587
[TBL] [Abstract][Full Text] [Related]
13. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
Busch A; Backofen R
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
[TBL] [Abstract][Full Text] [Related]
14. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
Reeder J; Giegerich R
Bioinformatics; 2005 Sep; 21(17):3516-23. PubMed ID: 16020472
[TBL] [Abstract][Full Text] [Related]
15. An algorithm for detecting homologues of known structured RNAs in genomes.
Le SY; Maizel JV; Zhang K
Proc IEEE Comput Syst Bioinform Conf; 2004; ():300-10. PubMed ID: 16448023
[TBL] [Abstract][Full Text] [Related]
16. RNA structure alignment by a unit-vector approach.
Capriotti E; Marti-Renom MA
Bioinformatics; 2008 Aug; 24(16):i112-8. PubMed ID: 18689811
[TBL] [Abstract][Full Text] [Related]
17. Fast and accurate search for non-coding RNA pseudoknot structures in genomes.
Huang Z; Wu Y; Robertson J; Feng L; Malmberg RL; Cai L
Bioinformatics; 2008 Oct; 24(20):2281-7. PubMed ID: 18687694
[TBL] [Abstract][Full Text] [Related]
18. Pair hidden Markov models on tree structures.
Sakakibara Y
Bioinformatics; 2003; 19 Suppl 1():i232-40. PubMed ID: 12855464
[TBL] [Abstract][Full Text] [Related]
19. A method for aligning RNA secondary structures and its application to RNA motif detection.
Liu J; Wang JT; Hu J; Tian B
BMC Bioinformatics; 2005 Apr; 6():89. PubMed ID: 15817128
[TBL] [Abstract][Full Text] [Related]
20. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
Ji Y; Xu X; Stormo GD
Bioinformatics; 2004 Jul; 20(10):1591-602. PubMed ID: 14962926
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]