93 related articles for article (PubMed ID: 17090462)
1. Modelling the biomechanical properties of DNA using computer simulation.
Harris SA
Philos Trans A Math Phys Eng Sci; 2006 Dec; 364(1849):3319-34. PubMed ID: 17090462
[TBL] [Abstract][Full Text] [Related]
2. Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA.
Harris SA; Sands ZA; Laughton CA
Biophys J; 2005 Mar; 88(3):1684-91. PubMed ID: 15626714
[TBL] [Abstract][Full Text] [Related]
3. DNA stretching and compression: large-scale simulations of double helical structures.
Kosikov KM; Gorin AA; Zhurkin VB; Olson WK
J Mol Biol; 1999 Jun; 289(5):1301-26. PubMed ID: 10373369
[TBL] [Abstract][Full Text] [Related]
4. Molecular dynamics simulations of a r(GA12G).d(CT12C) hybrid duplex.
Fritsch V; Wolf RM
J Biomol Struct Dyn; 1994 Jun; 11(6):1161-74. PubMed ID: 7524540
[TBL] [Abstract][Full Text] [Related]
5. [DNA structure from A to Z--biological implications of structural diversity of DNA].
Bukowiecka-Matusiak M; Woźniak LA
Postepy Biochem; 2006; 52(3):229-38. PubMed ID: 17201057
[TBL] [Abstract][Full Text] [Related]
6. Structure-based identification of new high-affinity nucleosome binding sequences.
Battistini F; Hunter CA; Moore IK; Widom J
J Mol Biol; 2012 Jun; 420(1-2):8-16. PubMed ID: 22472421
[TBL] [Abstract][Full Text] [Related]
7. Helix-coil transition of a four-way DNA junction observed by multiple fluorescence parameters.
Vámosi G; Clegg RM
J Phys Chem B; 2008 Oct; 112(41):13136-48. PubMed ID: 18811195
[TBL] [Abstract][Full Text] [Related]
8. Computer simulation of protein-induced structural changes in closed circular DNA.
Zhang P; Tobias I; Olson WK
J Mol Biol; 1994 Sep; 242(3):271-90. PubMed ID: 8089847
[TBL] [Abstract][Full Text] [Related]
9. Lattice model of oligonucleotide hybridization in solution. I. Model and thermodynamics.
Araque JC; Panagiotopoulos AZ; Robert MA
J Chem Phys; 2011 Apr; 134(16):165103. PubMed ID: 21528982
[TBL] [Abstract][Full Text] [Related]
10. Nucleic acid based molecular devices.
Krishnan Y; Simmel FC
Angew Chem Int Ed Engl; 2011 Mar; 50(14):3124-56. PubMed ID: 21432950
[TBL] [Abstract][Full Text] [Related]
11. Conformational response of supercoiled DNA to confinement in a nanochannel.
Lim W; Ng SY; Lee C; Feng YP; van der Maarel JR
J Chem Phys; 2008 Oct; 129(16):165102. PubMed ID: 19045317
[TBL] [Abstract][Full Text] [Related]
12. Molecular dynamics simulations and thermodynamics analysis of DNA-drug complexes. Minor groove binding between 4',6-diamidino-2-phenylindole and DNA duplexes in solution.
Spacková N; Cheatham TE; Ryjácek F; Lankas F; Van Meervelt L; Hobza P; Sponer J
J Am Chem Soc; 2003 Feb; 125(7):1759-69. PubMed ID: 12580601
[TBL] [Abstract][Full Text] [Related]
13. Comparison of the thermodynamics and base-pair dynamics of a full LNA:DNA duplex and of the isosequential DNA:DNA duplex.
Bruylants G; Boccongelli M; Snoussi K; Bartik K
Biochemistry; 2009 Sep; 48(35):8473-82. PubMed ID: 19670874
[TBL] [Abstract][Full Text] [Related]
14. Prediction and design of DNA and RNA structures.
Andersen ES
N Biotechnol; 2010 Jul; 27(3):184-93. PubMed ID: 20193785
[TBL] [Abstract][Full Text] [Related]
15. Statistical mechanics of ribbons under bending and twisting torques.
Sinha S; Samuel J
J Phys Condens Matter; 2013 Nov; 25(46):465102. PubMed ID: 24113491
[TBL] [Abstract][Full Text] [Related]
16. Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model.
Ouldridge TE; Louis AA; Doye JP
J Chem Phys; 2011 Feb; 134(8):085101. PubMed ID: 21361556
[TBL] [Abstract][Full Text] [Related]
17. The structure and dynamics of DNA in the gas phase.
Rueda M; Kalko SG; Luque FJ; Orozco M
J Am Chem Soc; 2003 Jul; 125(26):8007-14. PubMed ID: 12823023
[TBL] [Abstract][Full Text] [Related]
18. Recognition of RNA by amide modified backbone nucleic acids: molecular dynamics simulations of DNA-RNA hybrids in aqueous solution.
Nina M; Fonné-Pfister R; Beaudegnies R; Chekatt H; Jung PM; Murphy-Kessabi F; De Mesmaeker A; Wendeborn S
J Am Chem Soc; 2005 Apr; 127(16):6027-38. PubMed ID: 15839703
[TBL] [Abstract][Full Text] [Related]
19. Kinetics and dynamics of DNA hybridization.
Yin Y; Zhao XS
Acc Chem Res; 2011 Nov; 44(11):1172-81. PubMed ID: 21718008
[TBL] [Abstract][Full Text] [Related]
20. Allosteric interactions between DNA strands and monovalent cations in DNA quadruplex assembly: thermodynamic evidence for three linked association pathways.
Hardin CC; Corregan MJ; Lieberman DV; Brown BA
Biochemistry; 1997 Dec; 36(49):15428-50. PubMed ID: 9398273
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]