BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

222 related articles for article (PubMed ID: 17092036)

  • 1. Can principal components yield a dimension reduced description of protein dynamics on long time scales?
    Lange OF; Grubmüller H
    J Phys Chem B; 2006 Nov; 110(45):22842-52. PubMed ID: 17092036
    [TBL] [Abstract][Full Text] [Related]  

  • 2. On the convergence of the conformational coordinates basis set obtained by the essential dynamics analysis of proteins' molecular dynamics simulations.
    Amadei A; Ceruso MA; Di Nola A
    Proteins; 1999 Sep; 36(4):419-24. PubMed ID: 10450083
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Full correlation analysis of conformational protein dynamics.
    Lange OF; Grubmüller H
    Proteins; 2008 Mar; 70(4):1294-312. PubMed ID: 17876828
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Local feature analysis: a statistical theory for reproducible essential dynamics of large macromolecules.
    Zhang Z; Wriggers W
    Proteins; 2006 Aug; 64(2):391-403. PubMed ID: 16700056
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Collective Langevin dynamics of conformational motions in proteins.
    Lange OF; Grubmüller H
    J Chem Phys; 2006 Jun; 124(21):214903. PubMed ID: 16774438
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Application of time series analysis on molecular dynamics simulations of proteins: a study of different conformational spaces by principal component analysis.
    Alakent B; Doruker P; Camurdan MC
    J Chem Phys; 2004 Sep; 121(10):4759-69. PubMed ID: 15332910
    [TBL] [Abstract][Full Text] [Related]  

  • 7. How many atoms are required to characterize accurately trajectory fluctuations of a protein?
    Cukier RI
    J Chem Phys; 2010 Jun; 132(24):245101. PubMed ID: 20590215
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Conformational states and folding pathways of peptides revealed by principal-independent component analyses.
    Nguyen PH
    Proteins; 2007 May; 67(3):579-92. PubMed ID: 17348012
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Molecular dynamics of large-ring cyclodextrins: principal component analysis of the conformational interconversions.
    Gotsev MG; Ivanov PM
    J Phys Chem B; 2009 Apr; 113(17):5752-9. PubMed ID: 19344106
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Efficient characterization of collective motions and interresidue correlations in proteins by low-resolution simulations.
    Bahar I; Erman B; Haliloglu T; Jernigan RL
    Biochemistry; 1997 Nov; 36(44):13512-23. PubMed ID: 9354619
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Dihedral angle principal component analysis of molecular dynamics simulations.
    Altis A; Nguyen PH; Hegger R; Stock G
    J Chem Phys; 2007 Jun; 126(24):244111. PubMed ID: 17614541
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Solvent effects in the slow dynamics of proteins.
    Hinsen K; Kneller GR
    Proteins; 2008 Mar; 70(4):1235-42. PubMed ID: 17853448
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Detecting coupled collective motions in protein by independent subspace analysis.
    Sakuraba S; Joti Y; Kitao A
    J Chem Phys; 2010 Nov; 133(18):185102. PubMed ID: 21073231
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Generalized correlation for biomolecular dynamics.
    Lange OF; Grubmüller H
    Proteins; 2006 Mar; 62(4):1053-61. PubMed ID: 16355416
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Comparative structural studies of psychrophilic and mesophilic protein homologues by molecular dynamics simulation.
    Kundu S; Roy D
    J Mol Graph Model; 2009; 27(8):871-80. PubMed ID: 19223214
    [TBL] [Abstract][Full Text] [Related]  

  • 16. X-ray structural and simulation analysis of a protein mutant: the value of a combined approach.
    Mattos C; Cohen JD; Green DF; Tidor B; Karplus M
    Proteins; 2004 May; 55(3):733-42. PubMed ID: 15103635
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Free-energy landscape, principal component analysis, and structural clustering to identify representative conformations from molecular dynamics simulations: the myoglobin case.
    Papaleo E; Mereghetti P; Fantucci P; Grandori R; De Gioia L
    J Mol Graph Model; 2009; 27(8):889-99. PubMed ID: 19264523
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme.
    Hayward S; Berendsen HJ
    Proteins; 1998 Feb; 30(2):144-54. PubMed ID: 9489922
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations.
    Hünenberger PH; Mark AE; van Gunsteren WF
    J Mol Biol; 1995 Sep; 252(4):492-503. PubMed ID: 7563068
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Principal component and normal mode analysis of proteins; a quantitative comparison using the GroEL subunit.
    Skjaerven L; Martinez A; Reuter N
    Proteins; 2011 Jan; 79(1):232-43. PubMed ID: 21058295
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.