These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

162 related articles for article (PubMed ID: 17099939)

  • 1. Rnall: an efficient algorithm for predicting RNA local secondary structural landscape in genomes.
    Wan XF; Lin G; Xu D
    J Bioinform Comput Biol; 2006 Oct; 4(5):1015-31. PubMed ID: 17099939
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An algorithm for detecting homologues of known structured RNAs in genomes.
    Le SY; Maizel JV; Zhang K
    Proc IEEE Comput Syst Bioinform Conf; 2004; ():300-10. PubMed ID: 16448023
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment.
    Xu X; Ji Y; Stormo GD
    Bioinformatics; 2007 Aug; 23(15):1883-91. PubMed ID: 17537756
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Memory efficient folding algorithms for circular RNA secondary structures.
    Hofacker IL; Stadler PF
    Bioinformatics; 2006 May; 22(10):1172-6. PubMed ID: 16452114
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Tree decomposition based fast search of RNA structures including pseudoknots in genomes.
    Song Y; Liu C; Malmberg R; Pan F; Cai L
    Proc IEEE Comput Syst Bioinform Conf; 2005; ():223-34. PubMed ID: 16447980
    [TBL] [Abstract][Full Text] [Related]  

  • 7. taveRNA: a web suite for RNA algorithms and applications.
    Aksay C; Salari R; Karakoc E; Alkan C; Sahinalp SC
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W325-9. PubMed ID: 17488837
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
    Ruan J; Stormo GD; Zhang W
    Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CONTRAfold: RNA secondary structure prediction without physics-based models.
    Do CB; Woods DA; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Predicting the secondary structure common to two RNA sequences with Dynalign.
    Mathews D
    Curr Protoc Bioinformatics; 2004 Dec; Chapter 12():Unit 12.4. PubMed ID: 18428718
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RNA secondary structure analysis using the Vienna RNA package.
    Hofacker IL
    Curr Protoc Bioinformatics; 2004 Feb; Chapter 12():Unit 12.2. PubMed ID: 18428716
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Prediction of locally stable RNA secondary structures for genome-wide surveys.
    Hofacker IL; Priwitzer B; Stadler PF
    Bioinformatics; 2004 Jan; 20(2):186-90. PubMed ID: 14734309
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Considerations in the identification of functional RNA structural elements in genomic alignments.
    Babak T; Blencowe BJ; Hughes TR
    BMC Bioinformatics; 2007 Jan; 8():33. PubMed ID: 17263882
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Efficient parameter estimation for RNA secondary structure prediction.
    Andronescu M; Condon A; Hoos HH; Mathews DH; Murphy KP
    Bioinformatics; 2007 Jul; 23(13):i19-28. PubMed ID: 17646296
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Local RNA base pairing probabilities in large sequences.
    Bernhart SH; Hofacker IL; Stadler PF
    Bioinformatics; 2006 Mar; 22(5):614-5. PubMed ID: 16368769
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structure clustering features on the Sfold Web server.
    Chan CY; Lawrence CE; Ding Y
    Bioinformatics; 2005 Oct; 21(20):3926-8. PubMed ID: 16109749
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Local sequence-structure motifs in RNA.
    Backofen R; Will S
    J Bioinform Comput Biol; 2004 Dec; 2(4):681-98. PubMed ID: 15617161
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ProbKnot: fast prediction of RNA secondary structure including pseudoknots.
    Bellaousov S; Mathews DH
    RNA; 2010 Oct; 16(10):1870-80. PubMed ID: 20699301
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RADAR: a web server for RNA data analysis and research.
    Khaladkar M; Bellofatto V; Wang JT; Tian B; Shapiro BA
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W300-4. PubMed ID: 17517784
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines.
    Xu X; Ji Y; Stormo GD
    PLoS Comput Biol; 2009 Apr; 5(4):e1000338. PubMed ID: 19343219
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.