201 related articles for article (PubMed ID: 17118190)
1. Connectivity independent protein-structure alignment: a hierarchical approach.
Kolbeck B; May P; Schmidt-Goenner T; Steinke T; Knapp EW
BMC Bioinformatics; 2006 Nov; 7():510. PubMed ID: 17118190
[TBL] [Abstract][Full Text] [Related]
2. Novel protein folds and their nonsequential structural analogs.
Guerler A; Knapp EW
Protein Sci; 2008 Aug; 17(8):1374-82. PubMed ID: 18583523
[TBL] [Abstract][Full Text] [Related]
3. GIS: a comprehensive source for protein structure similarities.
Guerler A; Knapp EW
Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W46-52. PubMed ID: 20460464
[TBL] [Abstract][Full Text] [Related]
4. MICAN: a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C(α) only models, Alternative alignments, and Non-sequential alignments.
Minami S; Sawada K; Chikenji G
BMC Bioinformatics; 2013 Jan; 14():24. PubMed ID: 23331634
[TBL] [Abstract][Full Text] [Related]
5. Detailed protein sequence alignment based on Spectral Similarity Score (SSS).
Gupta K; Thomas D; Vidya SV; Venkatesh KV; Ramakumar S
BMC Bioinformatics; 2005 Apr; 6():105. PubMed ID: 15850477
[TBL] [Abstract][Full Text] [Related]
6. Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins.
Yuan X; Bystroff C
Bioinformatics; 2005 Apr; 21(7):1010-9. PubMed ID: 15531601
[TBL] [Abstract][Full Text] [Related]
7. Accuracy of structure-based sequence alignment of automatic methods.
Kim C; Lee B
BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
[TBL] [Abstract][Full Text] [Related]
8. Analysis of conservation and substitutions of secondary structure elements within protein superfamilies.
Mizuguchi K; Blundell T
Bioinformatics; 2000 Dec; 16(12):1111-9. PubMed ID: 11159330
[TBL] [Abstract][Full Text] [Related]
9. Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words.
Lin HN; Notredame C; Chang JM; Sung TY; Hsu WL
PLoS One; 2011; 6(12):e27872. PubMed ID: 22163274
[TBL] [Abstract][Full Text] [Related]
10. SE: an algorithm for deriving sequence alignment from a pair of superimposed structures.
Tai CH; Vincent JJ; Kim C; Lee B
BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S4. PubMed ID: 19208141
[TBL] [Abstract][Full Text] [Related]
11. Biological insights from topology independent comparison of protein 3D structures.
Nguyen MN; Madhusudhan MS
Nucleic Acids Res; 2011 Aug; 39(14):e94. PubMed ID: 21596786
[TBL] [Abstract][Full Text] [Related]
12. MASS: multiple structural alignment by secondary structures.
Dror O; Benyamini H; Nussinov R; Wolfson H
Bioinformatics; 2003; 19 Suppl 1():i95-104. PubMed ID: 12855444
[TBL] [Abstract][Full Text] [Related]
13. CAALIGN: a program for pairwise and multiple protein-structure alignment.
Oldfield TJ
Acta Crystallogr D Biol Crystallogr; 2007 Apr; 63(Pt 4):514-25. PubMed ID: 17372357
[TBL] [Abstract][Full Text] [Related]
14. ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs.
Kong L; Ju F; Zheng WM; Zhu J; Sun S; Xu J; Bu D
J Comput Biol; 2022 Feb; 29(2):92-105. PubMed ID: 35073170
[TBL] [Abstract][Full Text] [Related]
15. Protein structure comparison by probability-based matching of secondary structure elements.
Shih ES; Hwang MJ
Bioinformatics; 2003 Apr; 19(6):735-41. PubMed ID: 12691985
[TBL] [Abstract][Full Text] [Related]
16. Structure-dependent sequence alignment for remotely related proteins.
Yang AS
Bioinformatics; 2002 Dec; 18(12):1658-65. PubMed ID: 12490451
[TBL] [Abstract][Full Text] [Related]
17. AL2CO: calculation of positional conservation in a protein sequence alignment.
Pei J; Grishin NV
Bioinformatics; 2001 Aug; 17(8):700-12. PubMed ID: 11524371
[TBL] [Abstract][Full Text] [Related]
18. Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score.
Pandit SB; Skolnick J
BMC Bioinformatics; 2008 Dec; 9():531. PubMed ID: 19077267
[TBL] [Abstract][Full Text] [Related]
19. High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.
Teichert F; Minning J; Bastolla U; Porto M
BMC Bioinformatics; 2010 May; 11():251. PubMed ID: 20470364
[TBL] [Abstract][Full Text] [Related]
20. Adaptive Smith-Waterman residue match seeding for protein structural alignment.
Topham CM; Rouquier M; Tarrat N; André I
Proteins; 2013 Oct; 81(10):1823-39. PubMed ID: 23720362
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
