BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 17127215)

  • 1. Evaluation of six methods for estimating synonymous and nonsynonymous substitution rates.
    Zhang Z; Yu J
    Genomics Proteomics Bioinformatics; 2006 Aug; 4(3):173-81. PubMed ID: 17127215
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Empirical codon substitution matrix.
    Schneider A; Cannarozzi GM; Gonnet GH
    BMC Bioinformatics; 2005 Jun; 6():134. PubMed ID: 15927081
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Not so different after all: a comparison of methods for detecting amino acid sites under selection.
    Kosakovsky Pond SL; Frost SD
    Mol Biol Evol; 2005 May; 22(5):1208-22. PubMed ID: 15703242
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Gamma-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates.
    Wang DP; Wan HL; Zhang S; Yu J
    Biol Direct; 2009 Jun; 4():20. PubMed ID: 19531225
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Computing Ka and Ks with a consideration of unequal transitional substitutions.
    Zhang Z; Li J; Yu J
    BMC Evol Biol; 2006 Jun; 6():44. PubMed ID: 16740169
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparison of three methods for estimating rates of synonymous and nonsynonymous nucleotide substitutions.
    Tzeng YH; Pan R; Li WH
    Mol Biol Evol; 2004 Dec; 21(12):2290-8. PubMed ID: 15329386
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Synonymous substitutions substantially improve evolutionary inference from highly diverged proteins.
    Seo TK; Kishino H
    Syst Biol; 2008 Jun; 57(3):367-77. PubMed ID: 18570032
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Synonymous and nonsynonymous rate variation in nuclear genes of mammals.
    Yang Z; Nielsen R
    J Mol Evol; 1998 Apr; 46(4):409-18. PubMed ID: 9541535
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Rates of nucleotide substitution and mammalian nuclear gene evolution. Approximate and maximum-likelihood methods lead to different conclusions.
    Bielawski JP; Dunn KA; Yang Z
    Genetics; 2000 Nov; 156(3):1299-308. PubMed ID: 11063703
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Molecular evolution of synonymous codon usage in Populus.
    Ingvarsson PK
    BMC Evol Biol; 2008 Nov; 8():307. PubMed ID: 18983655
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Site-to-site variation of synonymous substitution rates.
    Pond SK; Muse SV
    Mol Biol Evol; 2005 Dec; 22(12):2375-85. PubMed ID: 16107593
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Codon substitution models based on residue similarity and their applications.
    Liu X; Liu H; Guo W; Yu K
    Gene; 2012 Nov; 509(1):136-41. PubMed ID: 22902303
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences.
    Seo TK; Kishino H; Thorne JL
    Mol Biol Evol; 2004 Jul; 21(7):1201-13. PubMed ID: 15014159
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An empirical codon model for protein sequence evolution.
    Kosiol C; Holmes I; Goldman N
    Mol Biol Evol; 2007 Jul; 24(7):1464-79. PubMed ID: 17400572
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Nonsynonymous substitution rate (Ka) is a relatively consistent parameter for defining fast-evolving and slow-evolving protein-coding genes.
    Wang D; Liu F; Wang L; Huang S; Yu J
    Biol Direct; 2011 Feb; 6():13. PubMed ID: 21342519
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evolutionary models accounting for layers of selection in protein-coding genes and their impact on the inference of positive selection.
    Rubinstein ND; Doron-Faigenboim A; Mayrose I; Pupko T
    Mol Biol Evol; 2011 Dec; 28(12):3297-308. PubMed ID: 21690564
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.
    Muse SV; Gaut BS
    Mol Biol Evol; 1994 Sep; 11(5):715-24. PubMed ID: 7968485
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A comparison of methods for estimating the transition:transversion ratio from DNA sequences.
    Kristina Strandberg AK; Salter LA
    Mol Phylogenet Evol; 2004 Aug; 32(2):495-503. PubMed ID: 15223032
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The genetic code can cause systematic bias in simple phylogenetic models.
    Whelan S
    Philos Trans R Soc Lond B Biol Sci; 2008 Dec; 363(1512):4003-11. PubMed ID: 18852102
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.