These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

234 related articles for article (PubMed ID: 17140283)

  • 21. Statistical modeling of transcription factor binding affinities predicts regulatory interactions.
    Manke T; Roider HG; Vingron M
    PLoS Comput Biol; 2008 Mar; 4(3):e1000039. PubMed ID: 18369429
    [TBL] [Abstract][Full Text] [Related]  

  • 22. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
    Niu M; Tabari ES; Su Z
    BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502
    [TBL] [Abstract][Full Text] [Related]  

  • 23. SPACER: identification of cis-regulatory elements with non-contiguous critical residues.
    Chakravarty A; Carlson JM; Khetani RS; DeZiel CE; Gross RH
    Bioinformatics; 2007 Apr; 23(8):1029-31. PubMed ID: 17470480
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Eukaryotic transcription factor binding sites--modeling and integrative search methods.
    Hannenhalli S
    Bioinformatics; 2008 Jun; 24(11):1325-31. PubMed ID: 18426806
    [TBL] [Abstract][Full Text] [Related]  

  • 25. TFBScluster: a resource for the characterization of transcriptional regulatory networks.
    Donaldson IJ; Chapman M; Göttgens B
    Bioinformatics; 2005 Jul; 21(13):3058-9. PubMed ID: 15855248
    [TBL] [Abstract][Full Text] [Related]  

  • 26. XcisClique: analysis of regulatory bicliques.
    Pati A; Vasquez-Robinet C; Heath LS; Grene R; Murali TM
    BMC Bioinformatics; 2006 Apr; 7():218. PubMed ID: 16630346
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Predicting genetic regulatory response using classification.
    Middendorf M; Kundaje A; Wiggins C; Freund Y; Leslie C
    Bioinformatics; 2004 Aug; 20 Suppl 1():i232-40. PubMed ID: 15262804
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Inferring quantitative models of regulatory networks from expression data.
    Nachman I; Regev A; Friedman N
    Bioinformatics; 2004 Aug; 20 Suppl 1():i248-56. PubMed ID: 15262806
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Erroneous attribution of relevant transcription factor binding sites despite successful prediction of cis-regulatory modules.
    Halfon MS; Zhu Q; Brennan ER; Zhou Y
    BMC Genomics; 2011 Nov; 12():578. PubMed ID: 22115527
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Comparative analysis of regulatory motif discovery tools for transcription factor binding sites.
    Wei W; Yu XD
    Genomics Proteomics Bioinformatics; 2007 May; 5(2):131-42. PubMed ID: 17893078
    [TBL] [Abstract][Full Text] [Related]  

  • 31. BLISS 2.0: a web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences.
    Meng H; Banerjee A; Zhou L
    Bioinformatics; 2007 Dec; 23(23):3249-50. PubMed ID: 17660203
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Computational discovery of transcriptional regulatory rules.
    Pham TH; Clemente JC; Satou K; Ho TB
    Bioinformatics; 2005 Sep; 21 Suppl 2():ii101-7. PubMed ID: 16204087
    [TBL] [Abstract][Full Text] [Related]  

  • 33. In silico discovery of transcription regulatory elements in Plasmodium falciparum.
    Young JA; Johnson JR; Benner C; Yan SF; Chen K; Le Roch KG; Zhou Y; Winzeler EA
    BMC Genomics; 2008 Feb; 9():70. PubMed ID: 18257930
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Genetic programs constructed from layered logic gates in single cells.
    Moon TS; Lou C; Tamsir A; Stanton BC; Voigt CA
    Nature; 2012 Nov; 491(7423):249-53. PubMed ID: 23041931
    [TBL] [Abstract][Full Text] [Related]  

  • 35. OSCAR: one-class SVM for accurate recognition of cis-elements.
    Jiang B; Zhang MQ; Zhang X
    Bioinformatics; 2007 Nov; 23(21):2823-8. PubMed ID: 17921174
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A Hox Transcription Factor Collective Binds a Highly Conserved Distal-less cis-Regulatory Module to Generate Robust Transcriptional Outcomes.
    Uhl JD; Zandvakili A; Gebelein B
    PLoS Genet; 2016 Apr; 12(4):e1005981. PubMed ID: 27058369
    [TBL] [Abstract][Full Text] [Related]  

  • 37. In silico detection of sequence variations modifying transcriptional regulation.
    Andersen MC; Engström PG; Lithwick S; Arenillas D; Eriksson P; Lenhard B; Wasserman WW; Odeberg J
    PLoS Comput Biol; 2008 Jan; 4(1):e5. PubMed ID: 18208319
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites.
    Dieterich C; Herwig R; Vingron M
    Bioinformatics; 2003 Oct; 19 Suppl 2():ii50-6. PubMed ID: 14534171
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Genome-wide decoding of hierarchical modular structure of transcriptional regulation by cis-element and expression clustering.
    Leyfer D; Weng Z
    Bioinformatics; 2005 Sep; 21 Suppl 2():ii197-203. PubMed ID: 16204103
    [TBL] [Abstract][Full Text] [Related]  

  • 40. MotifCut: regulatory motifs finding with maximum density subgraphs.
    Fratkin E; Naughton BT; Brutlag DL; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e150-7. PubMed ID: 16873465
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.