203 related articles for article (PubMed ID: 1715564)
1. Empirical solvation models can be used to differentiate native from near-native conformations of bovine pancreatic trypsin inhibitor.
Vila J; Williams RL; Vásquez M; Scheraga HA
Proteins; 1991; 10(3):199-218. PubMed ID: 1715564
[TBL] [Abstract][Full Text] [Related]
2. Empirical solvation models in the context of conformational energy searches: application to bovine pancreatic trypsin inhibitor.
Williams RL; Vila J; Perrot G; Scheraga HA
Proteins; 1992 Sep; 14(1):110-9. PubMed ID: 1384032
[TBL] [Abstract][Full Text] [Related]
3. On the multiple-minima problem in the conformational analysis of polypeptides. V. Application of the self-consistent electrostatic field and the electrostatically driven Monte Carlo methods to bovine pancreatic trypsin inhibitor.
Ripoll DR; Piela L; Vásquez M; Scheraga HA
Proteins; 1991; 10(3):188-98. PubMed ID: 1715563
[TBL] [Abstract][Full Text] [Related]
4. Prediction of a 12-residue loop in bovine pancreatic trypsin inhibitor: effects of buried water.
Carlacci L
Biopolymers; 2001 Apr; 58(4):359-73. PubMed ID: 11180050
[TBL] [Abstract][Full Text] [Related]
5. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
Avbelj F
J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
[TBL] [Abstract][Full Text] [Related]
6. Determination of conformational equilibrium of peptides in solution by NMR spectroscopy and theoretical conformational analysis: application to the calibration of mean-field solvation models.
Groth M; Malicka J; Rodziewicz- Motowidło S; Czaplewski C; Klaudel L; Wiczk W; Liwo A
Biopolymers; 2001; 60(2):79-95. PubMed ID: 11455544
[TBL] [Abstract][Full Text] [Related]
7. A continuum model for protein-protein interactions: application to the docking problem.
Jackson RM; Sternberg MJ
J Mol Biol; 1995 Jul; 250(2):258-75. PubMed ID: 7541840
[TBL] [Abstract][Full Text] [Related]
8. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
Vorobjev YN; Almagro JC; Hermans J
Proteins; 1998 Sep; 32(4):399-413. PubMed ID: 9726412
[TBL] [Abstract][Full Text] [Related]
9. Selecting near-native conformations in homology modeling: the role of molecular mechanics and solvation terms.
Janardhan A; Vajda S
Protein Sci; 1998 Aug; 7(8):1772-80. PubMed ID: 10082374
[TBL] [Abstract][Full Text] [Related]
10. Surface area included in energy refinement of proteins. A comparative study on atomic solvation parameters.
von Freyberg B; Richmond TJ; Braun W
J Mol Biol; 1993 Sep; 233(2):275-92. PubMed ID: 7690855
[TBL] [Abstract][Full Text] [Related]
11. Hydration of proteins. A comparison of experimental residence times of water molecules solvating the bovine pancreatic trypsin inhibitor with theoretical model calculations.
Brunne RM; Liepinsh E; Otting G; Wüthrich K; van Gunsteren WF
J Mol Biol; 1993 Jun; 231(4):1040-8. PubMed ID: 7685828
[TBL] [Abstract][Full Text] [Related]
12. Simultaneous refinement of the structure of BPTI against NMR data measured in solution and X-ray diffraction data measured in single crystals.
Schiffer CA; Huber R; Wüthrich K; van Gunsteren WF
J Mol Biol; 1994 Aug; 241(4):588-99. PubMed ID: 7520085
[TBL] [Abstract][Full Text] [Related]
13. FACTS: Fast analytical continuum treatment of solvation.
Haberthür U; Caflisch A
J Comput Chem; 2008 Apr; 29(5):701-15. PubMed ID: 17918282
[TBL] [Abstract][Full Text] [Related]
14. Structure and internal dynamics of the bovine pancreatic trypsin inhibitor in aqueous solution from long-time molecular dynamics simulations.
Brunne RM; Berndt KD; Güntert P; Wüthrich K; van Gunsteren WF
Proteins; 1995 Sep; 23(1):49-62. PubMed ID: 8539250
[TBL] [Abstract][Full Text] [Related]
15. Rapid refinement of protein interfaces incorporating solvation: application to the docking problem.
Jackson RM; Gabb HA; Sternberg MJ
J Mol Biol; 1998 Feb; 276(1):265-85. PubMed ID: 9514726
[TBL] [Abstract][Full Text] [Related]
16. Local conformations of peptides representing the entire sequence of bovine pancreatic trypsin inhibitor and their roles in folding.
Kemmink J; Creighton TE
J Mol Biol; 1993 Dec; 234(3):861-78. PubMed ID: 7504737
[TBL] [Abstract][Full Text] [Related]
17. Necessary conditions for avoiding incorrect polypeptide folds in conformational search by energy minimization.
Vajda S; Jafri MS; Sezerman OU; DeLisi C
Biopolymers; 1993 Jan; 33(1):173-92. PubMed ID: 8427934
[TBL] [Abstract][Full Text] [Related]
18. Structural properties of hydration shell around various conformations of simple polypeptides.
Czapiewski D; Zielkiewicz J
J Phys Chem B; 2010 Apr; 114(13):4536-50. PubMed ID: 20232827
[TBL] [Abstract][Full Text] [Related]
19. Solution structure and backbone dynamics of the human alpha3-chain type VI collagen C-terminal Kunitz domain,
Sorensen MD; Bjorn S; Norris K; Olsen O; Petersen L; James TL; Led JJ
Biochemistry; 1997 Aug; 36(34):10439-50. PubMed ID: 9265624
[TBL] [Abstract][Full Text] [Related]
20. An efficient mean solvation force model for use in molecular dynamics simulations of proteins in aqueous solution.
Fraternali F; Van Gunsteren WF
J Mol Biol; 1996 Mar; 256(5):939-48. PubMed ID: 8601844
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]