241 related articles for article (PubMed ID: 17164328)
1. Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites.
Bazykin GA; Dushoff J; Levin SA; Kondrashov AS
Proc Natl Acad Sci U S A; 2006 Dec; 103(51):19396-401. PubMed ID: 17164328
[TBL] [Abstract][Full Text] [Related]
2. Inferring natural selection operating on conservative and radical substitution at single amino acid sites.
Suzuki Y
Genes Genet Syst; 2007 Aug; 82(4):341-60. PubMed ID: 17895585
[TBL] [Abstract][Full Text] [Related]
3. Positive selection at sites of multiple amino acid replacements since rat-mouse divergence.
Bazykin GA; Kondrashov FA; Ogurtsov AY; Sunyaev S; Kondrashov AS
Nature; 2004 Jun; 429(6991):558-62. PubMed ID: 15175752
[TBL] [Abstract][Full Text] [Related]
4. A method for detecting positive selection at single amino acid sites.
Suzuki Y; Gojobori T
Mol Biol Evol; 1999 Oct; 16(10):1315-28. PubMed ID: 10563013
[TBL] [Abstract][Full Text] [Related]
5. Major role of positive selection in the evolution of conservative segments of Drosophila proteins.
Bazykin GA; Kondrashov AS
Proc Biol Sci; 2012 Sep; 279(1742):3409-17. PubMed ID: 22673359
[TBL] [Abstract][Full Text] [Related]
6. Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences.
Ngandu NK; Scheffler K; Moore P; Woodman Z; Martin D; Seoighe C
Virol J; 2008 Dec; 5():160. PubMed ID: 19105834
[TBL] [Abstract][Full Text] [Related]
7. Detecting Adaptation in Protein-Coding Genes Using a Bayesian Site-Heterogeneous Mutation-Selection Codon Substitution Model.
Rodrigue N; Lartillot N
Mol Biol Evol; 2017 Jan; 34(1):204-214. PubMed ID: 27744408
[TBL] [Abstract][Full Text] [Related]
8. Distinct patterns of natural selection in the reverse transcriptase gene of HIV-1 in the presence and absence of antiretroviral therapy.
de S Leal E; Holmes EC; Zanotto PM
Virology; 2004 Aug; 325(2):181-91. PubMed ID: 15246258
[TBL] [Abstract][Full Text] [Related]
9. The site-wise log-likelihood score is a good predictor of genes under positive selection.
Wang HC; Susko E; Roger AJ
J Mol Evol; 2013 May; 76(5):280-94. PubMed ID: 23595859
[TBL] [Abstract][Full Text] [Related]
10. Codon Usage Selection Can Bias Estimation of the Fraction of Adaptive Amino Acid Fixations.
Matsumoto T; John A; Baeza-Centurion P; Li B; Akashi H
Mol Biol Evol; 2016 Jun; 33(6):1580-9. PubMed ID: 26873577
[TBL] [Abstract][Full Text] [Related]
11. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene.
Nielsen R; Yang Z
Genetics; 1998 Mar; 148(3):929-36. PubMed ID: 9539414
[TBL] [Abstract][Full Text] [Related]
12. Physicochemical Amino Acid Properties Better Describe Substitution Rates in Large Populations.
Weber CC; Whelan S
Mol Biol Evol; 2019 Apr; 36(4):679-690. PubMed ID: 30668757
[TBL] [Abstract][Full Text] [Related]
13. New methods for detecting positive selection at single amino acid sites.
Suzuki Y
J Mol Evol; 2004 Jul; 59(1):11-9. PubMed ID: 15383903
[TBL] [Abstract][Full Text] [Related]
14. Not so different after all: a comparison of methods for detecting amino acid sites under selection.
Kosakovsky Pond SL; Frost SD
Mol Biol Evol; 2005 May; 22(5):1208-22. PubMed ID: 15703242
[TBL] [Abstract][Full Text] [Related]
15. The roles of positive and negative selection in the molecular evolution of insect endosymbionts.
Fry AJ; Wernegreen JJ
Gene; 2005 Aug; 355():1-10. PubMed ID: 16039807
[TBL] [Abstract][Full Text] [Related]
16. Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes.
Yang Z; Swanson WJ
Mol Biol Evol; 2002 Jan; 19(1):49-57. PubMed ID: 11752189
[TBL] [Abstract][Full Text] [Related]
17. Molecular evolution of nuclear genes in Cupressacea, a group of conifer trees.
Kusumi J; Tsumura Y; Yoshimaru H; Tachida H
Mol Biol Evol; 2002 May; 19(5):736-47. PubMed ID: 11961107
[TBL] [Abstract][Full Text] [Related]
18. Modeling the site-specific variation of selection patterns along lineages.
Guindon S; Rodrigo AG; Dyer KA; Huelsenbeck JP
Proc Natl Acad Sci U S A; 2004 Aug; 101(35):12957-62. PubMed ID: 15326304
[TBL] [Abstract][Full Text] [Related]
19. The reverse transcriptase sequence of human immunodeficiency virus type 1 is under positive evolutionary selection within the central nervous system.
Huang KJ; Alter GM; Wooley DP
J Neurovirol; 2002 Aug; 8(4):281-94. PubMed ID: 12161813
[TBL] [Abstract][Full Text] [Related]
20. Correlated evolution of synonymous and nonsynonymous sites in Drosophila.
Marais G; Domazet-Loso T; Tautz D; Charlesworth B
J Mol Evol; 2004 Dec; 59(6):771-9. PubMed ID: 15599509
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]