404 related articles for article (PubMed ID: 17201922)
1. Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network.
Malik A; Ahmad S
BMC Struct Biol; 2007 Jan; 7():1. PubMed ID: 17201922
[TBL] [Abstract][Full Text] [Related]
2. PSSM-based prediction of DNA binding sites in proteins.
Ahmad S; Sarai A
BMC Bioinformatics; 2005 Feb; 6():33. PubMed ID: 15720719
[TBL] [Abstract][Full Text] [Related]
3. Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information.
Ahmad S; Gromiha MM; Sarai A
Bioinformatics; 2004 Mar; 20(4):477-86. PubMed ID: 14990443
[TBL] [Abstract][Full Text] [Related]
4. InCa-SiteFinder: a method for structure-based prediction of inositol and carbohydrate binding sites on proteins.
Kulharia M; Bridgett SJ; Goody RS; Jackson RM
J Mol Graph Model; 2009 Oct; 28(3):297-303. PubMed ID: 19762259
[TBL] [Abstract][Full Text] [Related]
5. Identification and Analysis of Key Residues Involved in Folding and Binding of Protein-carbohydrate Complexes.
Shanmugam NRS; Selvin JFA; Veluraja K; Gromiha MM
Protein Pept Lett; 2018; 25(4):379-389. PubMed ID: 29473490
[TBL] [Abstract][Full Text] [Related]
6. Sequence based residue depth prediction using evolutionary information and predicted secondary structure.
Zhang H; Zhang T; Chen K; Shen S; Ruan J; Kurgan L
BMC Bioinformatics; 2008 Sep; 9():388. PubMed ID: 18803867
[TBL] [Abstract][Full Text] [Related]
7. Protein secondary structure prediction with SPARROW.
Bettella F; Rasinski D; Knapp EW
J Chem Inf Model; 2012 Feb; 52(2):545-56. PubMed ID: 22224407
[TBL] [Abstract][Full Text] [Related]
8. Residue-level prediction of DNA-binding sites and its application on DNA-binding protein predictions.
Bhardwaj N; Lu H
FEBS Lett; 2007 Mar; 581(5):1058-66. PubMed ID: 17316627
[TBL] [Abstract][Full Text] [Related]
9. Role of evolutionary information in prediction of aromatic-backbone NH interactions in proteins.
Kaur H; Raghava GP
FEBS Lett; 2004 Apr; 564(1-2):47-57. PubMed ID: 15094041
[TBL] [Abstract][Full Text] [Related]
10. Structure-based prediction of DNA target sites by regulatory proteins.
Kono H; Sarai A
Proteins; 1999 Apr; 35(1):114-31. PubMed ID: 10090291
[TBL] [Abstract][Full Text] [Related]
11. Prediction of carbohydrate binding sites on protein surfaces with 3-dimensional probability density distributions of interacting atoms.
Tsai KC; Jian JW; Yang EW; Hsu PC; Peng HP; Chen CT; Chen JB; Chang JY; Hsu WL; Yang AS
PLoS One; 2012; 7(7):e40846. PubMed ID: 22848404
[TBL] [Abstract][Full Text] [Related]
12. Solvent structure improves docking prediction in lectin-carbohydrate complexes.
Gauto DF; Petruk AA; Modenutti CP; Blanco JI; Di Lella S; Martí MA
Glycobiology; 2013 Feb; 23(2):241-58. PubMed ID: 23089616
[TBL] [Abstract][Full Text] [Related]
13. How different are structurally flexible and rigid binding sites? Sequence and structural features discriminating proteins that do and do not undergo conformational change upon ligand binding.
Gunasekaran K; Nussinov R
J Mol Biol; 2007 Jan; 365(1):257-73. PubMed ID: 17059826
[TBL] [Abstract][Full Text] [Related]
14. Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks.
Andrabi M; Mizuguchi K; Sarai A; Ahmad S
BMC Struct Biol; 2009 May; 9():30. PubMed ID: 19439068
[TBL] [Abstract][Full Text] [Related]
15. Stabilization centers in proteins: identification, characterization and predictions.
Dosztányi Z; Fiser A; Simon I
J Mol Biol; 1997 Oct; 272(4):597-612. PubMed ID: 9325115
[TBL] [Abstract][Full Text] [Related]
16. NMR investigations of protein-carbohydrate interactions: studies on the relevance of Trp/Tyr variations in lectin binding sites as deduced from titration microcalorimetry and NMR studies on hevein domains. Determination of the NMR structure of the complex between pseudohevein and N,N',N"-triacetylchitotriose.
Asensio JL; Siebert HC; von Der Lieth CW; Laynez J; Bruix M; Soedjanaamadja UM; Beintema JJ; Cañada FJ; Gabius HJ; Jiménez-Barbero J
Proteins; 2000 Aug; 40(2):218-36. PubMed ID: 10842338
[TBL] [Abstract][Full Text] [Related]
17. Solvent accessibility in native and isolated domain environments: general features and implications to interface predictability.
Raih MF; Ahmad S; Zheng R; Mohamed R
Biophys Chem; 2005 Apr; 114(1):63-9. PubMed ID: 15792862
[TBL] [Abstract][Full Text] [Related]
18. A 3D model for the human hepatic asialoglycoprotein receptor (ASGP-R).
Bianucci AM; Chiellini F
J Biomol Struct Dyn; 2000 Dec; 18(3):435-51. PubMed ID: 11149519
[TBL] [Abstract][Full Text] [Related]
19. Prediction of protein hydration sites from sequence by modular neural networks.
Ehrlich L; Reczko M; Bohr H; Wade RC
Protein Eng; 1998 Jan; 11(1):11-9. PubMed ID: 9579655
[TBL] [Abstract][Full Text] [Related]
20. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
Yang AS; Honig B
J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
