141 related articles for article (PubMed ID: 17217522)
1. A fast parallel algorithm for finding the longest common sequence of multiple biosequences.
Chen Y; Wan A; Liu W
BMC Bioinformatics; 2006 Dec; 7 Suppl 4(Suppl 4):S4. PubMed ID: 17217522
[TBL] [Abstract][Full Text] [Related]
2. An OpenMP-based tool for finding longest common subsequence in bioinformatics.
Shikder R; Thulasiraman P; Irani P; Hu P
BMC Res Notes; 2019 Apr; 12(1):220. PubMed ID: 30971295
[TBL] [Abstract][Full Text] [Related]
3. Parallel progressive multiple sequence alignment on reconfigurable meshes.
Nguyen KD; Pan Y; Nong G
BMC Genomics; 2011 Dec; 12 Suppl 5(Suppl 5):S4. PubMed ID: 22369070
[TBL] [Abstract][Full Text] [Related]
4. Using Multiple Fickett Bands to Accelerate Biological Sequence Comparisons.
Silva GHG; Sandes EFO; Teodoro G; Melo ACMA
J Comput Biol; 2019 Sep; 26(9):908-922. PubMed ID: 30951368
[No Abstract] [Full Text] [Related]
5. Efficient Computation of Longest Common Subsequences with Multiple Substring Inclusive Constraints.
Wang X; Wang L; Zhu D
J Comput Biol; 2019 Sep; 26(9):938-947. PubMed ID: 30958704
[No Abstract] [Full Text] [Related]
6. Multiple sequence alignment in parallel on a workstation cluster.
Ebedes J; Datta A
Bioinformatics; 2004 May; 20(7):1193-5. PubMed ID: 14764554
[TBL] [Abstract][Full Text] [Related]
7. Super pairwise alignment (SPA): an efficient approach to global alignment for homologous sequences.
Shen SY; Yang J; Yao A; Hwang PI
J Comput Biol; 2002; 9(3):477-86. PubMed ID: 12162887
[TBL] [Abstract][Full Text] [Related]
8. A memory-efficient algorithm for multiple sequence alignment with constraints.
Lu CL; Huang YP
Bioinformatics; 2005 Jan; 21(1):20-30. PubMed ID: 15374876
[TBL] [Abstract][Full Text] [Related]
9. A parallel pairwise local sequence alignment algorithm.
Bandyopadhyay S; Mitra R
IEEE Trans Nanobioscience; 2009 Jun; 8(2):139-46. PubMed ID: 19366648
[TBL] [Abstract][Full Text] [Related]
10. Efficient constrained multiple sequence alignment with performance guarantee.
Chin FY; Ho NL; Lam TW; Wong PW
J Bioinform Comput Biol; 2005 Feb; 3(1):1-18. PubMed ID: 15751109
[TBL] [Abstract][Full Text] [Related]
11. Exact asymptotic results for the Bernoulli matching model of sequence alignment.
Majumdar SN; Nechaev S
Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Aug; 72(2 Pt 1):020901. PubMed ID: 16196539
[TBL] [Abstract][Full Text] [Related]
12. Parallel pattern identification in biological sequences on clusters.
Huang CH; Rajasekaran S
IEEE Trans Nanobioscience; 2003 Mar; 2(1):29-34. PubMed ID: 15382420
[TBL] [Abstract][Full Text] [Related]
13. An improved distance matrix computation algorithm for multicore clusters.
Al-Neama MW; Reda NM; Ghaleb FF
Biomed Res Int; 2014; 2014():406178. PubMed ID: 25013779
[TBL] [Abstract][Full Text] [Related]
14. PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences.
Katoh K; Toh H
Bioinformatics; 2007 Feb; 23(3):372-4. PubMed ID: 17118958
[TBL] [Abstract][Full Text] [Related]
15. Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm.
Ning K; Leong HW
BMC Bioinformatics; 2006 Dec; 7 Suppl 4(Suppl 4):S12. PubMed ID: 17217504
[TBL] [Abstract][Full Text] [Related]
16. Using sequence compression to speedup probabilistic profile matching.
Freschi V; Bogliolo A
Bioinformatics; 2005 May; 21(10):2225-9. PubMed ID: 15713733
[TBL] [Abstract][Full Text] [Related]
17. A new algorithm for "the LCS problem" with application in compressing genome resequencing data.
Beal R; Afrin T; Farheen A; Adjeroh D
BMC Genomics; 2016 Aug; 17 Suppl 4(Suppl 4):544. PubMed ID: 27556803
[TBL] [Abstract][Full Text] [Related]
18. Randomized and parallel algorithms for distance matrix calculations in multiple sequence alignment.
Rajasekaran S; Thapar V; Dave H; Huang CH
J Clin Monit Comput; 2005 Oct; 19(4-5):351-9. PubMed ID: 16328949
[TBL] [Abstract][Full Text] [Related]
19. Multiple sequence alignment with arbitrary gap costs: computing an optimal solution using polyhedral combinatorics.
Althaus E; Caprara A; Lenhof HP; Reinert K
Bioinformatics; 2002; 18 Suppl 2():S4-S16. PubMed ID: 12385977
[TBL] [Abstract][Full Text] [Related]
20. Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost.
Yamada S; Gotoh O; Yamana H
BMC Bioinformatics; 2006 Dec; 7():524. PubMed ID: 17137519
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]