93 related articles for article (PubMed ID: 17237094)
1. Prediction and simulation of motion in pairs of transmembrane alpha-helices.
Enosh A; Fleishman SJ; Ben-Tal N; Halperin D
Bioinformatics; 2007 Jan; 23(2):e212-8. PubMed ID: 17237094
[TBL] [Abstract][Full Text] [Related]
2. Assigning transmembrane segments to helices in intermediate-resolution structures.
Enosh A; Fleishman SJ; Ben-Tal N; Halperin D
Bioinformatics; 2004 Aug; 20 Suppl 1():i122-9. PubMed ID: 15262790
[TBL] [Abstract][Full Text] [Related]
3. Prediction of the burial status of transmembrane residues of helical membrane proteins.
Park Y; Hayat S; Helms V
BMC Bioinformatics; 2007 Aug; 8():302. PubMed ID: 17708758
[TBL] [Abstract][Full Text] [Related]
4. A systematic search method for the identification of tightly packed transmembrane parallel alpha-helices.
Akula N; Pattabiraman N
J Biomol Struct Dyn; 2005 Jun; 22(6):625-34. PubMed ID: 15842168
[TBL] [Abstract][Full Text] [Related]
5. Assembly of transmembrane helices of simple polytopic membrane proteins from sequence conservation patterns.
Park Y; Helms V
Proteins; 2006 Sep; 64(4):895-905. PubMed ID: 16807902
[TBL] [Abstract][Full Text] [Related]
6. An automatic method for predicting transmembrane protein structures using cryo-EM and evolutionary data.
Fleishman SJ; Harrington S; Friesner RA; Honig B; Ben-Tal N
Biophys J; 2004 Nov; 87(5):3448-59. PubMed ID: 15339802
[TBL] [Abstract][Full Text] [Related]
7. How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins?
Park Y; Helms V
Biopolymers; 2006 Nov; 83(4):389-99. PubMed ID: 16838301
[TBL] [Abstract][Full Text] [Related]
8. A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins.
Beuming T; Weinstein H
Bioinformatics; 2004 Aug; 20(12):1822-35. PubMed ID: 14988128
[TBL] [Abstract][Full Text] [Related]
9. ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins.
Granseth E; Viklund H; Elofsson A
Bioinformatics; 2006 Jul; 22(14):e191-6. PubMed ID: 16873471
[TBL] [Abstract][Full Text] [Related]
10. Insights into the recognition and association of transmembrane alpha-helices. The free energy of alpha-helix dimerization in glycophorin A.
Hénin J; Pohorille A; Chipot C
J Am Chem Soc; 2005 Jun; 127(23):8478-84. PubMed ID: 15941282
[TBL] [Abstract][Full Text] [Related]
11. Novel scoring function for modeling structures of oligomers of transmembrane alpha-helices.
Park Y; Elsner M; Staritzbichler R; Helms V
Proteins; 2004 Nov; 57(3):577-85. PubMed ID: 15382237
[TBL] [Abstract][Full Text] [Related]
12. OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar.
Viklund H; Elofsson A
Bioinformatics; 2008 Aug; 24(15):1662-8. PubMed ID: 18474507
[TBL] [Abstract][Full Text] [Related]
13. Enhanced recognition of protein transmembrane domains with prediction-based structural profiles.
Cao B; Porollo A; Adamczak R; Jarrell M; Meller J
Bioinformatics; 2006 Feb; 22(3):303-9. PubMed ID: 16293670
[TBL] [Abstract][Full Text] [Related]
14. On the derivation of propensity scales for predicting exposed transmembrane residues of helical membrane proteins.
Park Y; Helms V
Bioinformatics; 2007 Mar; 23(6):701-8. PubMed ID: 17237049
[TBL] [Abstract][Full Text] [Related]
15. A combinatorial pattern discovery approach for the prediction of membrane dipping (re-entrant) loops.
Lasso G; Antoniw JF; Mullins JG
Bioinformatics; 2006 Jul; 22(14):e290-7. PubMed ID: 16873484
[TBL] [Abstract][Full Text] [Related]
16. TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.
Tusnády GE; Dosztányi Z; Simon I
Bioinformatics; 2005 Apr; 21(7):1276-7. PubMed ID: 15539454
[TBL] [Abstract][Full Text] [Related]
17. A novel scoring function for predicting the conformations of tightly packed pairs of transmembrane alpha-helices.
Fleishman SJ; Ben-Tal N
J Mol Biol; 2002 Aug; 321(2):363-78. PubMed ID: 12144792
[TBL] [Abstract][Full Text] [Related]
18. A periodicity analysis of transmembrane helices.
Leonov H; Arkin IT
Bioinformatics; 2005 Jun; 21(11):2604-10. PubMed ID: 15746278
[TBL] [Abstract][Full Text] [Related]
19. Transmembrane proteins in the Protein Data Bank: identification and classification.
Tusnády GE; Dosztányi Z; Simon I
Bioinformatics; 2004 Nov; 20(17):2964-72. PubMed ID: 15180935
[TBL] [Abstract][Full Text] [Related]
20. Structural determinants of transmembrane helical proteins.
Harrington SE; Ben-Tal N
Structure; 2009 Aug; 17(8):1092-103. PubMed ID: 19679087
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
