These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

140 related articles for article (PubMed ID: 17237103)

  • 21. Multiple structural alignment and clustering of RNA sequences.
    Torarinsson E; Havgaard JH; Gorodkin J
    Bioinformatics; 2007 Apr; 23(8):926-32. PubMed ID: 17324941
    [TBL] [Abstract][Full Text] [Related]  

  • 22. On counting position weight matrix matches in a sequence, with application to discriminative motif finding.
    Sinha S
    Bioinformatics; 2006 Jul; 22(14):e454-63. PubMed ID: 16873507
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
    Najmanovich R; Kurbatova N; Thornton J
    Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models.
    Wong WS; Nielsen R
    Bioinformatics; 2007 Aug; 23(16):2031-7. PubMed ID: 17550911
    [TBL] [Abstract][Full Text] [Related]  

  • 25. ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors.
    Papatsenko D
    Bioinformatics; 2007 Apr; 23(8):1032-4. PubMed ID: 17308342
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Computational methods for the detection of cis-regulatory modules.
    Van Loo P; Marynen P
    Brief Bioinform; 2009 Sep; 10(5):509-24. PubMed ID: 19498042
    [TBL] [Abstract][Full Text] [Related]  

  • 27. ARTS: accurate recognition of transcription starts in human.
    Sonnenburg S; Zien A; Rätsch G
    Bioinformatics; 2006 Jul; 22(14):e472-80. PubMed ID: 16873509
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Non-additivity in protein-DNA binding.
    O'Flanagan RA; Paillard G; Lavery R; Sengupta AM
    Bioinformatics; 2005 May; 21(10):2254-63. PubMed ID: 15746285
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 30. RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.
    Chen X; Hughes TR; Morris Q
    Bioinformatics; 2007 Jul; 23(13):i72-9. PubMed ID: 17646348
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment.
    Kim J; Sinha S
    Bioinformatics; 2007 Feb; 23(3):289-97. PubMed ID: 17110370
    [TBL] [Abstract][Full Text] [Related]  

  • 32. TFBScluster: a resource for the characterization of transcriptional regulatory networks.
    Donaldson IJ; Chapman M; Göttgens B
    Bioinformatics; 2005 Jul; 21(13):3058-9. PubMed ID: 15855248
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Sequence features of DNA binding sites reveal structural class of associated transcription factor.
    Narlikar L; Hartemink AJ
    Bioinformatics; 2006 Jan; 22(2):157-63. PubMed ID: 16267080
    [TBL] [Abstract][Full Text] [Related]  

  • 34. SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition.
    Oshchepkov DY; Vityaev EE; Grigorovich DA; Ignatieva EV; Khlebodarova TM
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W208-12. PubMed ID: 15215382
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Position dependencies in transcription factor binding sites.
    Tomovic A; Oakeley EJ
    Bioinformatics; 2007 Apr; 23(8):933-41. PubMed ID: 17308339
    [TBL] [Abstract][Full Text] [Related]  

  • 36. MatInspector and beyond: promoter analysis based on transcription factor binding sites.
    Cartharius K; Frech K; Grote K; Klocke B; Haltmeier M; Klingenhoff A; Frisch M; Bayerlein M; Werner T
    Bioinformatics; 2005 Jul; 21(13):2933-42. PubMed ID: 15860560
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Efficient identification of DNA hybridization partners in a sequence database.
    Mann TP; Noble WS
    Bioinformatics; 2006 Jul; 22(14):e350-8. PubMed ID: 16873493
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations.
    Kel A; Konovalova T; Waleev T; Cheremushkin E; Kel-Margoulis O; Wingender E
    Bioinformatics; 2006 May; 22(10):1190-7. PubMed ID: 16473870
    [TBL] [Abstract][Full Text] [Related]  

  • 39. An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization.
    Qian Z; Lu L; Liu X; Cai YD; Li Y
    Bioinformatics; 2007 Sep; 23(18):2449-54. PubMed ID: 17623704
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Detection of generic spaced motifs using submotif pattern mining.
    Wijaya E; Rajaraman K; Yiu SM; Sung WK
    Bioinformatics; 2007 Jun; 23(12):1476-85. PubMed ID: 17483509
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.