119 related articles for article (PubMed ID: 17242521)
1. On the precision of calculated solvent-accessible surface areas.
Novotny M; Seibert M; Kleywegt GJ
Acta Crystallogr D Biol Crystallogr; 2007 Feb; 63(Pt 2):270-4. PubMed ID: 17242521
[TBL] [Abstract][Full Text] [Related]
2. Molecular dynamics simulation of hen egg white lysozyme: a test of the GROMOS96 force field against nuclear magnetic resonance data.
Stocker U; van Gunsteren WF
Proteins; 2000 Jul; 40(1):145-53. PubMed ID: 10813839
[TBL] [Abstract][Full Text] [Related]
3. Molecular dynamics and accuracy of NMR structures: effects of error bounds and data removal.
Chalaoux FR; O'Donoghue SI; Nilges M
Proteins; 1999 Mar; 34(4):453-63. PubMed ID: 10081958
[TBL] [Abstract][Full Text] [Related]
4. Molecular dynamics simulations for water and ions in protein crystals.
Hu Z; Jiang J
Langmuir; 2008 Apr; 24(8):4215-23. PubMed ID: 18318554
[TBL] [Abstract][Full Text] [Related]
5. The influence of molecular variation on protein interactions.
Ho JG; Middelberg AP
Biotechnol Bioeng; 2003 Dec; 84(5):611-6. PubMed ID: 14574695
[TBL] [Abstract][Full Text] [Related]
6. Molecular dynamics simulation of a high-affinity antibody-protein complex: the binding site is a mosaic of locally flexible and preorganized rigid regions.
Sinha N; Smith-Gill SJ
Cell Biochem Biophys; 2005; 43(2):253-73. PubMed ID: 16049350
[TBL] [Abstract][Full Text] [Related]
7. The use of NMR chemical shifts to analyse the MD trajectories: simulation of bovine pancreatic trypsin inhibitor dynamics in water as a test case for solvent influences.
Busetta B; Picard P; Precigoux G
J Pept Sci; 2003 Jul; 9(7):450-60. PubMed ID: 12916642
[TBL] [Abstract][Full Text] [Related]
8. Dynamics of hydration in hen egg white lysozyme.
Sterpone F; Ceccarelli M; Marchi M
J Mol Biol; 2001 Aug; 311(2):409-19. PubMed ID: 11478869
[TBL] [Abstract][Full Text] [Related]
9. Real value prediction of solvent accessibility from amino acid sequence.
Ahmad S; Gromiha MM; Sarai A
Proteins; 2003 Mar; 50(4):629-35. PubMed ID: 12577269
[TBL] [Abstract][Full Text] [Related]
10. Protein imperfections: separating intrinsic from extrinsic variation of torsion angles.
Butterfoss GL; Richardson JS; Hermans J
Acta Crystallogr D Biol Crystallogr; 2005 Jan; 61(Pt 1):88-98. PubMed ID: 15608380
[TBL] [Abstract][Full Text] [Related]
11. Constant pH molecular dynamics in generalized Born implicit solvent.
Mongan J; Case DA; McCammon JA
J Comput Chem; 2004 Dec; 25(16):2038-48. PubMed ID: 15481090
[TBL] [Abstract][Full Text] [Related]
12. Evaluation of the protein solvent-accessible surface using reduced representations in terms of critical points of the electron density.
Becue A; Meurice N; Leherte L; Vercauteren DP
J Comput Chem; 2004 Jul; 25(9):1117-26. PubMed ID: 15116355
[TBL] [Abstract][Full Text] [Related]
13. A large data set comparison of protein structures determined by crystallography and NMR: statistical test for structural differences and the effect of crystal packing.
Andrec M; Snyder DA; Zhou Z; Young J; Montelione GT; Levy RM
Proteins; 2007 Nov; 69(3):449-65. PubMed ID: 17623851
[TBL] [Abstract][Full Text] [Related]
14. SVM-Cabins: prediction of solvent accessibility using accumulation cutoff set and support vector machine.
Wang JY; Lee HM; Ahmad S
Proteins; 2007 Jul; 68(1):82-91. PubMed ID: 17436325
[TBL] [Abstract][Full Text] [Related]
15. Role of the solvent in the dynamical transitions of proteins: the case of the lysozyme-water system.
Mallamace F; Chen SH; Broccio M; Corsaro C; Crupi V; Majolino D; Venuti V; Baglioni P; Fratini E; Vannucci C; Stanley HE
J Chem Phys; 2007 Jul; 127(4):045104. PubMed ID: 17672727
[TBL] [Abstract][Full Text] [Related]
16. Calculation of nuclear magnetic resonance shieldings using frozen-density embedding.
Jacob CR; Visscher L
J Chem Phys; 2006 Nov; 125(19):194104. PubMed ID: 17129086
[TBL] [Abstract][Full Text] [Related]
17. Multiple solvent crystal structures of ribonuclease A: an assessment of the method.
Dechene M; Wink G; Smith M; Swartz P; Mattos C
Proteins; 2009 Sep; 76(4):861-81. PubMed ID: 19291738
[TBL] [Abstract][Full Text] [Related]
18. Prediction of protein accessible surface areas by support vector regression.
Yuan Z; Huang B
Proteins; 2004 Nov; 57(3):558-64. PubMed ID: 15382233
[TBL] [Abstract][Full Text] [Related]
19. Hot spot occlusion from bulk water: a comprehensive study of the complex between the lysozyme HEL and the antibody FVD1.3.
Moreira IS; Fernandes PA; Ramos MJ
J Phys Chem B; 2007 Mar; 111(10):2697-706. PubMed ID: 17315919
[TBL] [Abstract][Full Text] [Related]
20. Structure and dynamics of the homologous series of alanine peptides: a joint molecular dynamics/NMR study.
Graf J; Nguyen PH; Stock G; Schwalbe H
J Am Chem Soc; 2007 Feb; 129(5):1179-89. PubMed ID: 17263399
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
