189 related articles for article (PubMed ID: 17264128)
1. Structure-based prediction of C2H2 zinc-finger binding specificity: sensitivity to docking geometry.
Siggers TW; Honig B
Nucleic Acids Res; 2007; 35(4):1085-97. PubMed ID: 17264128
[TBL] [Abstract][Full Text] [Related]
2. De novo prediction of DNA-binding specificities for Cys2His2 zinc finger proteins.
Persikov AV; Singh M
Nucleic Acids Res; 2014 Jan; 42(1):97-108. PubMed ID: 24097433
[TBL] [Abstract][Full Text] [Related]
3. A structural approach reveals how neighbouring C2H2 zinc fingers influence DNA binding specificity.
Garton M; Najafabadi HS; Schmitges FW; Radovani E; Hughes TR; Kim PM
Nucleic Acids Res; 2015 Oct; 43(19):9147-57. PubMed ID: 26384429
[TBL] [Abstract][Full Text] [Related]
4. Structural and functional heterogeneity among the zinc fingers of human MRE-binding transcription factor-1.
Chen X; Agarwal A; Giedroc DP
Biochemistry; 1998 Aug; 37(32):11152-61. PubMed ID: 9698361
[TBL] [Abstract][Full Text] [Related]
5. On the prediction of DNA-binding preferences of C2H2-ZF domains using structural models: application on human CTCF.
Meseguer A; Årman F; Fornes O; Molina-Fernández R; Bonet J; Fernandez-Fuentes N; Oliva B
NAR Genom Bioinform; 2020 Sep; 2(3):lqaa046. PubMed ID: 33575598
[TBL] [Abstract][Full Text] [Related]
6. Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition.
Miller JC; Pabo CO
J Mol Biol; 2001 Oct; 313(2):309-15. PubMed ID: 11800559
[TBL] [Abstract][Full Text] [Related]
7. Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity.
Wuttke DS; Foster MP; Case DA; Gottesfeld JM; Wright PE
J Mol Biol; 1997 Oct; 273(1):183-206. PubMed ID: 9367756
[TBL] [Abstract][Full Text] [Related]
8. Structures of DNA-binding mutant zinc finger domains: implications for DNA binding.
Hoffman RC; Horvath SJ; Klevit RE
Protein Sci; 1993 Jun; 2(6):951-65. PubMed ID: 8318900
[TBL] [Abstract][Full Text] [Related]
9. The protein-binding potential of C2H2 zinc finger domains.
Brayer KJ; Kulshreshtha S; Segal DJ
Cell Biochem Biophys; 2008; 51(1):9-19. PubMed ID: 18286240
[TBL] [Abstract][Full Text] [Related]
10. Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases.
Mandell JG; Barbas CF
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W516-23. PubMed ID: 16845061
[TBL] [Abstract][Full Text] [Related]
11. An expanded binding model for Cys2His2 zinc finger protein-DNA interfaces.
Persikov AV; Singh M
Phys Biol; 2011 Jun; 8(3):035010. PubMed ID: 21572177
[TBL] [Abstract][Full Text] [Related]
12. ZIFIBI: Prediction of DNA binding sites for zinc finger proteins.
Cho SY; Chung M; Park M; Park S; Lee YS
Biochem Biophys Res Commun; 2008 May; 369(3):845-8. PubMed ID: 18325330
[TBL] [Abstract][Full Text] [Related]
13. Extensive protein and DNA backbone sampling improves structure-based specificity prediction for C2H2 zinc fingers.
Yanover C; Bradley P
Nucleic Acids Res; 2011 Jun; 39(11):4564-76. PubMed ID: 21343182
[TBL] [Abstract][Full Text] [Related]
14. Toward an atomistic model for predicting transcription-factor binding sites.
Endres RG; Schulthess TC; Wingreen NS
Proteins; 2004 Nov; 57(2):262-8. PubMed ID: 15340913
[TBL] [Abstract][Full Text] [Related]
15. PiDNA: Predicting protein-DNA interactions with structural models.
Lin CK; Chen CY
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W523-30. PubMed ID: 23703214
[TBL] [Abstract][Full Text] [Related]
16. DNA-induced alpha-helix capping in conserved linker sequences is a determinant of binding affinity in Cys(2)-His(2) zinc fingers.
Laity JH; Dyson HJ; Wright PE
J Mol Biol; 2000 Jan; 295(4):719-27. PubMed ID: 10656784
[TBL] [Abstract][Full Text] [Related]
17. ZiF-Predict: a web tool for predicting DNA-binding specificity in C2H2 zinc finger proteins.
Molparia B; Goyal K; Sarkar A; Kumar S; Sundar D
Genomics Proteomics Bioinformatics; 2010 Jun; 8(2):122-6. PubMed ID: 20691397
[TBL] [Abstract][Full Text] [Related]
18. Computational Methods for Analysis of the DNA-Binding Preferences of Cys2His2 Zinc-Finger Proteins.
Doğan B; Najafabadi HS
Methods Mol Biol; 2018; 1867():15-28. PubMed ID: 30155812
[TBL] [Abstract][Full Text] [Related]
19. Profiling the DNA-binding specificities of engineered Cys2His2 zinc finger domains using a rapid cell-based method.
Meng X; Thibodeau-Beganny S; Jiang T; Joung JK; Wolfe SA
Nucleic Acids Res; 2007; 35(11):e81. PubMed ID: 17537811
[TBL] [Abstract][Full Text] [Related]
20. Deep sequencing of large library selections allows computational discovery of diverse sets of zinc fingers that bind common targets.
Persikov AV; Rowland EF; Oakes BL; Singh M; Noyes MB
Nucleic Acids Res; 2014 Feb; 42(3):1497-508. PubMed ID: 24214968
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
