BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

524 related articles for article (PubMed ID: 17277411)

  • 1. EMatch: discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps.
    Lasker K; Dror O; Shatsky M; Nussinov R; Wolfson HJ
    IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(1):28-39. PubMed ID: 17277411
    [TBL] [Abstract][Full Text] [Related]  

  • 2. EMatch: an efficient method for aligning atomic resolution subunits into intermediate-resolution cryo-EM maps of large macromolecular assemblies.
    Dror O; Lasker K; Nussinov R; Wolfson H
    Acta Crystallogr D Biol Crystallogr; 2007 Jan; 63(Pt 1):42-9. PubMed ID: 17164525
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A blind deconvolution approach for improving the resolution of cryo-EM density maps.
    Hirsch M; Schölkopf B; Habeck M
    J Comput Biol; 2011 Mar; 18(3):335-46. PubMed ID: 21385038
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High-resolution single-particle 3D analysis on GroEL prepared by cryo-negative staining.
    De Carlo S; Boisset N; Hoenger A
    Micron; 2008 Oct; 39(7):934-43. PubMed ID: 18083582
    [TBL] [Abstract][Full Text] [Related]  

  • 5. FOLD-EM: automated fold recognition in medium- and low-resolution (4-15 Å) electron density maps.
    Saha M; Morais MC
    Bioinformatics; 2012 Dec; 28(24):3265-73. PubMed ID: 23131460
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Docking structures of domains into maps from cryo-electron microscopy using local correlation.
    Roseman AM
    Acta Crystallogr D Biol Crystallogr; 2000 Oct; 56(Pt 10):1332-40. PubMed ID: 10998630
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A Zernike-moment-based non-local denoising filter for cryo-EM images.
    Wang J; Yin C
    Sci China Life Sci; 2013 Apr; 56(4):384-90. PubMed ID: 23564187
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Consensus among multiple approaches as a reliability measure for flexible fitting into cryo-EM data.
    Ahmed A; Tama F
    J Struct Biol; 2013 May; 182(2):67-77. PubMed ID: 23416197
    [TBL] [Abstract][Full Text] [Related]  

  • 9. cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.
    Punjani A; Rubinstein JL; Fleet DJ; Brubaker MA
    Nat Methods; 2017 Mar; 14(3):290-296. PubMed ID: 28165473
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Refinement of Atomic Structures Against cryo-EM Maps.
    Murshudov GN
    Methods Enzymol; 2016; 579():277-305. PubMed ID: 27572731
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The 13 angstroms structure of a chaperonin GroEL-protein substrate complex by cryo-electron microscopy.
    Falke S; Tama F; Brooks CL; Gogol EP; Fisher MT
    J Mol Biol; 2005 Apr; 348(1):219-30. PubMed ID: 15808865
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images.
    Biswas A; Ranjan D; Zubair M; Zeil S; Nasr KA; He J
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(3):578-586. PubMed ID: 27008671
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Seeing GroEL at 6 A resolution by single particle electron cryomicroscopy.
    Ludtke SJ; Chen DH; Song JL; Chuang DT; Chiu W
    Structure; 2004 Jul; 12(7):1129-36. PubMed ID: 15242589
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Validating Resolution Revolution.
    Neumann P; Dickmanns A; Ficner R
    Structure; 2018 May; 26(5):785-795.e4. PubMed ID: 29606592
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ATTRACT-EM: a new method for the computational assembly of large molecular machines using cryo-EM maps.
    de Vries SJ; Zacharias M
    PLoS One; 2012; 7(12):e49733. PubMed ID: 23251350
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Improving the Accuracy of Fitted Atomic Models in Cryo-EM Density Maps of Protein Assemblies Using Evolutionary Information from Aligned Homologous Proteins.
    Rakesh R; Srinivasan N
    Methods Mol Biol; 2016; 1415():193-209. PubMed ID: 27115634
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.
    Wang RY; Song Y; Barad BA; Cheng Y; Fraser JS; DiMaio F
    Elife; 2016 Sep; 5():. PubMed ID: 27669148
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Cryo-EM of macromolecular assemblies at near-atomic resolution.
    Baker ML; Zhang J; Ludtke SJ; Chiu W
    Nat Protoc; 2010 Sep; 5(10):1697-708. PubMed ID: 20885381
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Model-based local density sharpening of cryo-EM maps.
    Jakobi AJ; Wilmanns M; Sachse C
    Elife; 2017 Oct; 6():. PubMed ID: 29058676
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Cryo-electron microscopy and the amazing race to atomic resolution.
    Binshtein E; Ohi MD
    Biochemistry; 2015 May; 54(20):3133-41. PubMed ID: 25955078
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 27.