BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

545 related articles for article (PubMed ID: 17282999)

  • 21. Protein structure comparison by alignment of distance matrices.
    Holm L; Sander C
    J Mol Biol; 1993 Sep; 233(1):123-38. PubMed ID: 8377180
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Rapid knot detection and application to protein structure prediction.
    Khatib F; Weirauch MT; Rohl CA
    Bioinformatics; 2006 Jul; 22(14):e252-9. PubMed ID: 16873480
    [TBL] [Abstract][Full Text] [Related]  

  • 23. HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences.
    Srivastava PK; Desai DK; Nandi S; Lynn AM
    BMC Bioinformatics; 2007 Mar; 8():104. PubMed ID: 17389042
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs.
    Shamim MT; Anwaruddin M; Nagarajaram HA
    Bioinformatics; 2007 Dec; 23(24):3320-7. PubMed ID: 17989092
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Multiple Alignment of protein structures and sequences for VMD.
    Eargle J; Wright D; Luthey-Schulten Z
    Bioinformatics; 2006 Feb; 22(4):504-6. PubMed ID: 16339280
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Scoredist: a simple and robust protein sequence distance estimator.
    Sonnhammer EL; Hollich V
    BMC Bioinformatics; 2005 Apr; 6():108. PubMed ID: 15857510
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Protein structure comparison using the markov transition model of evolution.
    Kawabata T; Nishikawa K
    Proteins; 2000 Oct; 41(1):108-22. PubMed ID: 10944398
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Prediction of protein structural class for the twilight zone sequences.
    Kurgan L; Chen K
    Biochem Biophys Res Commun; 2007 Jun; 357(2):453-60. PubMed ID: 17433260
    [TBL] [Abstract][Full Text] [Related]  

  • 29. An examination of the conservation of surface patch polarity for proteins.
    Shanahan HP; Thornton JM
    Bioinformatics; 2004 Sep; 20(14):2197-204. PubMed ID: 15073014
    [TBL] [Abstract][Full Text] [Related]  

  • 30. A comprehensive and non-redundant database of protein domain movements.
    Qi G; Lee R; Hayward S
    Bioinformatics; 2005 Jun; 21(12):2832-8. PubMed ID: 15802286
    [TBL] [Abstract][Full Text] [Related]  

  • 31. AMID: autonomous modeler of intragenic duplication.
    Kummerfeld SK; Weiss AS; Fekete A; Jermiin LS
    Appl Bioinformatics; 2003; 2(3):169-76. PubMed ID: 15130804
    [TBL] [Abstract][Full Text] [Related]  

  • 32. DIVAA: analysis of amino acid diversity in multiple aligned protein sequences.
    Rodi DJ; Mandava S; Makowski L
    Bioinformatics; 2004 Dec; 20(18):3481-9. PubMed ID: 15284106
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Targeting novel folds for structural genomics.
    McGuffin LJ; Jones DT
    Proteins; 2002 Jul; 48(1):44-52. PubMed ID: 12012336
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Blast sampling for structural and functional analyses.
    Friedrich A; Ripp R; Garnier N; Bettler E; Deléage G; Poch O; Moulinier L
    BMC Bioinformatics; 2007 Feb; 8():62. PubMed ID: 17319945
    [TBL] [Abstract][Full Text] [Related]  

  • 35. LFM-Pro: a tool for detecting significant local structural sites in proteins.
    Sacan A; Ozturk O; Ferhatosmanoglu H; Wang Y
    Bioinformatics; 2007 Mar; 23(6):709-16. PubMed ID: 17237050
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A similarity network approach for the analysis and comparison of protein sequence/structure sets.
    Valavanis I; Spyrou G; Nikita K
    J Biomed Inform; 2010 Apr; 43(2):257-67. PubMed ID: 20097308
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Potential implications of availability of short amino acid sequences in proteins: an old and new approach to protein decoding and design.
    Otaki JM; Gotoh T; Yamamoto H
    Biotechnol Annu Rev; 2008; 14():109-41. PubMed ID: 18606361
    [TBL] [Abstract][Full Text] [Related]  

  • 38. FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded.
    Prilusky J; Felder CE; Zeev-Ben-Mordehai T; Rydberg EH; Man O; Beckmann JS; Silman I; Sussman JL
    Bioinformatics; 2005 Aug; 21(16):3435-8. PubMed ID: 15955783
    [TBL] [Abstract][Full Text] [Related]  

  • 39. The family feud: do proteins with similar structures fold via the same pathway?
    Zarrine-Afsar A; Larson SM; Davidson AR
    Curr Opin Struct Biol; 2005 Feb; 15(1):42-9. PubMed ID: 15718132
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Protein structure prediction based on sequence similarity.
    Jaroszewski L
    Methods Mol Biol; 2009; 569():129-56. PubMed ID: 19623489
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 28.