187 related articles for article (PubMed ID: 17286872)
1. Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes.
Makita Y; de Hoon MJ; Danchin A
BMC Bioinformatics; 2007 Feb; 8():47. PubMed ID: 17286872
[TBL] [Abstract][Full Text] [Related]
2. Accuracy improvement for identifying translation initiation sites in microbial genomes.
Zhu HQ; Hu GQ; Ouyang ZQ; Wang J; She ZS
Bioinformatics; 2004 Dec; 20(18):3308-17. PubMed ID: 15247104
[TBL] [Abstract][Full Text] [Related]
3. Identifying translation initiation sites in prokaryotes using support vector machine.
Gao T; Yang Z; Wang Y; Jing L
J Theor Biol; 2010 Feb; 262(4):644-9. PubMed ID: 19840808
[TBL] [Abstract][Full Text] [Related]
4. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
Besemer J; Lomsadze A; Borodovsky M
Nucleic Acids Res; 2001 Jun; 29(12):2607-18. PubMed ID: 11410670
[TBL] [Abstract][Full Text] [Related]
5. MetWAMer: eukaryotic translation initiation site prediction.
Sparks ME; Brendel V
BMC Bioinformatics; 2008 Sep; 9():381. PubMed ID: 18801175
[TBL] [Abstract][Full Text] [Related]
6. MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes.
Zhu H; Hu GQ; Yang YF; Wang J; She ZS
BMC Bioinformatics; 2007 Mar; 8():97. PubMed ID: 17367537
[TBL] [Abstract][Full Text] [Related]
7. Computational evaluation of TIS annotation for prokaryotic genomes.
Hu GQ; Zheng X; Ju LN; Zhu H; She ZS
BMC Bioinformatics; 2008 Mar; 9():160. PubMed ID: 18366730
[TBL] [Abstract][Full Text] [Related]
8. An unsupervised classification scheme for improving predictions of prokaryotic TIS.
Tech M; Meinicke P
BMC Bioinformatics; 2006 Mar; 7():121. PubMed ID: 16526950
[TBL] [Abstract][Full Text] [Related]
9. Gene prediction in metagenomic fragments: a large scale machine learning approach.
Hoff KJ; Tech M; Lingner T; Daniel R; Morgenstern B; Meinicke P
BMC Bioinformatics; 2008 Apr; 9():217. PubMed ID: 18442389
[TBL] [Abstract][Full Text] [Related]
10. Improved prediction of bacterial transcription start sites.
Gordon JJ; Towsey MW; Hogan JM; Mathews SA; Timms P
Bioinformatics; 2006 Jan; 22(2):142-8. PubMed ID: 16287942
[TBL] [Abstract][Full Text] [Related]
11. A symbolic-numeric approach to find patterns in genomes. Application to the translation initiation sites of E. coli.
Delamarche C; Guerdoux-Jamet P; Gras R; Nicolas J
Biochimie; 1999 Nov; 81(11):1065-72. PubMed ID: 10575363
[TBL] [Abstract][Full Text] [Related]
12. Translation initiation site prediction on a genomic scale: beauty in simplicity.
Saeys Y; Abeel T; Degroeve S; Van de Peer Y
Bioinformatics; 2007 Jul; 23(13):i418-23. PubMed ID: 17646326
[TBL] [Abstract][Full Text] [Related]
13. TITER: predicting translation initiation sites by deep learning.
Zhang S; Hu H; Jiang T; Zhang L; Zeng J
Bioinformatics; 2017 Jul; 33(14):i234-i242. PubMed ID: 28881981
[TBL] [Abstract][Full Text] [Related]
14. In silico analysis of 5'-UTRs highlights the prevalence of Shine-Dalgarno and leaderless-dependent mechanisms of translation initiation in bacteria and archaea, respectively.
Srivastava A; Gogoi P; Deka B; Goswami S; Kanaujia SP
J Theor Biol; 2016 Aug; 402():54-61. PubMed ID: 27155047
[TBL] [Abstract][Full Text] [Related]
15. Bacterial start site prediction.
Hannenhalli SS; Hayes WS; Hatzigeorgiou AG; Fickett JW
Nucleic Acids Res; 1999 Sep; 27(17):3577-82. PubMed ID: 10446249
[TBL] [Abstract][Full Text] [Related]
16. SIGffRid: a tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics.
Touzain F; Schbath S; Debled-Rennesson I; Aigle B; Kucherov G; Leblond P
BMC Bioinformatics; 2008 Jan; 9():73. PubMed ID: 18237374
[TBL] [Abstract][Full Text] [Related]
17. Translation initiation start prediction in human cDNAs with high accuracy.
Hatzigeorgiou AG
Bioinformatics; 2002 Feb; 18(2):343-50. PubMed ID: 11847092
[TBL] [Abstract][Full Text] [Related]
18. Recognition of translation initiation sites of eukaryotic genes based on an EM algorithm.
Wang Y; Ou H; Guo F
J Comput Biol; 2003; 10(5):699-708. PubMed ID: 14633394
[TBL] [Abstract][Full Text] [Related]
19. Anatomy of Escherichia coli ribosome binding sites.
Shultzaberger RK; Bucheimer RE; Rudd KE; Schneider TD
J Mol Biol; 2001 Oct; 313(1):215-28. PubMed ID: 11601857
[TBL] [Abstract][Full Text] [Related]
20. Optimizing scaleup yield for protein production: Computationally Optimized DNA Assembly (CODA) and Translation Engineering.
Hatfield GW; Roth DA
Biotechnol Annu Rev; 2007; 13():27-42. PubMed ID: 17875472
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]