203 related articles for article (PubMed ID: 17293403)
21. Effect of oxidatively damaged DNA on the active site preorganization during nucleotide incorporation in a high fidelity polymerase from Bacillus stearothermophilus.
Venkatramani R; Radhakrishnan R
Proteins; 2008 May; 71(3):1360-72. PubMed ID: 18058909
[TBL] [Abstract][Full Text] [Related]
22. DNA binding strength increases the processivity and activity of a Y-Family DNA polymerase.
Wu J; de Paz A; Zamft BM; Marblestone AH; Boyden ES; Kording KP; Tyo KEJ
Sci Rep; 2017 Jul; 7(1):4756. PubMed ID: 28684739
[TBL] [Abstract][Full Text] [Related]
23. Mutagenic nucleotide incorporation and hindered translocation by a food carcinogen C8-dG adduct in Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): modeling and dynamics studies.
Zhang L; Rechkoblit O; Wang L; Patel DJ; Shapiro R; Broyde S
Nucleic Acids Res; 2006; 34(11):3326-37. PubMed ID: 16820532
[TBL] [Abstract][Full Text] [Related]
24. Correct and incorrect nucleotide incorporation pathways in DNA polymerase beta.
Radhakrishnan R; Schlick T
Biochem Biophys Res Commun; 2006 Nov; 350(3):521-9. PubMed ID: 17022941
[TBL] [Abstract][Full Text] [Related]
25. A new anti conformation for N-(deoxyguanosin-8-yl)-2-acetylaminofluorene (AAF-dG) allows Watson-Crick pairing in the Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4).
Wang L; Broyde S
Nucleic Acids Res; 2006; 34(3):785-95. PubMed ID: 16452300
[TBL] [Abstract][Full Text] [Related]
26. Viewing Human DNA Polymerase β Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
Vyas R; Reed AJ; Tokarsky EJ; Suo Z
J Am Chem Soc; 2015 Apr; 137(15):5225-30. PubMed ID: 25825995
[TBL] [Abstract][Full Text] [Related]
27. Relationship between conformational changes in pol lambda's active site upon binding incorrect nucleotides and mismatch incorporation rates.
Foley MC; Schlick T
J Phys Chem B; 2009 Oct; 113(39):13035-47. PubMed ID: 19572669
[TBL] [Abstract][Full Text] [Related]
28. Structural basis for proficient incorporation of dTTP opposite O6-methylguanine by human DNA polymerase iota.
Pence MG; Choi JY; Egli M; Guengerich FP
J Biol Chem; 2010 Dec; 285(52):40666-72. PubMed ID: 20961860
[TBL] [Abstract][Full Text] [Related]
29. Real-time surface plasmon resonance study of biomolecular interactions between polymerase and bulky mutagenic DNA lesions.
Xu L; Vaidyanathan VG; Cho BP
Chem Res Toxicol; 2014 Oct; 27(10):1796-807. PubMed ID: 25195494
[TBL] [Abstract][Full Text] [Related]
30. Structure of human DNA polymerase kappa inserting dATP opposite an 8-OxoG DNA lesion.
Vasquez-Del Carpio R; Silverstein TD; Lone S; Swan MK; Choudhury JR; Johnson RE; Prakash S; Prakash L; Aggarwal AK
PLoS One; 2009 Jun; 4(6):e5766. PubMed ID: 19492058
[TBL] [Abstract][Full Text] [Related]
31. "Gate-keeper" residues and active-site rearrangements in DNA polymerase μ help discriminate non-cognate nucleotides.
Li Y; Schlick T
PLoS Comput Biol; 2013; 9(5):e1003074. PubMed ID: 23717197
[TBL] [Abstract][Full Text] [Related]
32. Structural basis of DNA synthesis opposite 8-oxoguanine by human PrimPol primase-polymerase.
Rechkoblit O; Johnson RE; Gupta YK; Prakash L; Prakash S; Aggarwal AK
Nat Commun; 2021 Jun; 12(1):4020. PubMed ID: 34188055
[TBL] [Abstract][Full Text] [Related]
33. Critical role of magnesium ions in DNA polymerase beta's closing and active site assembly.
Yang L; Arora K; Beard WA; Wilson SH; Schlick T
J Am Chem Soc; 2004 Jul; 126(27):8441-53. PubMed ID: 15238001
[TBL] [Abstract][Full Text] [Related]
34. Structure of DNA polymerase beta with a benzo[c]phenanthrene diol epoxide-adducted template exhibits mutagenic features.
Batra VK; Shock DD; Prasad R; Beard WA; Hou EW; Pedersen LC; Sayer JM; Yagi H; Kumar S; Jerina DM; Wilson SH
Proc Natl Acad Sci U S A; 2006 Nov; 103(46):17231-6. PubMed ID: 17079493
[TBL] [Abstract][Full Text] [Related]
35. Importance of the C2, N7, and C8 positions to the mutagenic potential of 8-Oxo-2'-deoxyguanosine with two A family polymerases.
Hamm ML; Crowley KA; Ghio M; Del Giorno L; Gustafson MA; Kindler KE; Ligon CW; Lindell MA; McFadden EJ; Siekavizza-Robles C; Summers MR
Biochemistry; 2011 Dec; 50(49):10713-23. PubMed ID: 22081979
[TBL] [Abstract][Full Text] [Related]
36. Fidelity of nucleotide insertion at 8-oxo-7,8-dihydroguanine by mammalian DNA polymerase delta. Steady-state and pre-steady-state kinetic analysis.
Einolf HJ; Guengerich FP
J Biol Chem; 2001 Feb; 276(6):3764-71. PubMed ID: 11110788
[TBL] [Abstract][Full Text] [Related]
37. Local deformations revealed by dynamics simulations of DNA polymerase Beta with DNA mismatches at the primer terminus.
Yang L; Beard W; Wilson S; Roux B; Broyde S; Schlick T
J Mol Biol; 2002 Aug; 321(3):459-78. PubMed ID: 12162959
[TBL] [Abstract][Full Text] [Related]
38. Interaction of human DNA polymerase alpha and DNA polymerase I from Bacillus stearothermophilus with hypoxanthine and 8-oxoguanine nucleotides.
Patro JN; Urban M; Kuchta RD
Biochemistry; 2009 Sep; 48(34):8271-8. PubMed ID: 19642651
[TBL] [Abstract][Full Text] [Related]
39. How a low-fidelity DNA polymerase chooses non-Watson-Crick from Watson-Crick incorporation.
Wu WJ; Su MI; Wu JL; Kumar S; Lim LH; Wang CW; Nelissen FH; Chen MC; Doreleijers JF; Wijmenga SS; Tsai MD
J Am Chem Soc; 2014 Apr; 136(13):4927-37. PubMed ID: 24617852
[TBL] [Abstract][Full Text] [Related]
40. Molecular dynamics simulation of the opposite-base preference and interactions in the active site of formamidopyrimidine-DNA glycosylase.
Popov AV; Endutkin AV; Vorobjev YN; Zharkov DO
BMC Struct Biol; 2017 May; 17(1):5. PubMed ID: 28482831
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]