BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

214 related articles for article (PubMed ID: 17297928)

  • 1. Automatic validation of phosphopeptide identifications from tandem mass spectra.
    Lu B; Ruse C; Xu T; Park SK; Yates J
    Anal Chem; 2007 Feb; 79(4):1301-10. PubMed ID: 17297928
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Automatic validation of phosphopeptide identifications by the MS2/MS3 target-decoy search strategy.
    Jiang X; Han G; Feng S; Jiang X; Ye M; Yao X; Zou H
    J Proteome Res; 2008 Apr; 7(4):1640-9. PubMed ID: 18314942
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Colander: a probability-based support vector machine algorithm for automatic screening for CID spectra of phosphopeptides prior to database search.
    Lu B; Ruse CI; Yates JR
    J Proteome Res; 2008 Aug; 7(8):3628-34. PubMed ID: 18563924
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Correction of errors in tandem mass spectrum extraction enhances phosphopeptide identification.
    Hao P; Ren Y; Tam JP; Sze SK
    J Proteome Res; 2013 Dec; 12(12):5548-57. PubMed ID: 24147958
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Prophossi: automating expert validation of phosphopeptide-spectrum matches from tandem mass spectrometry.
    Martin DM; Nett IR; Vandermoere F; Barber JD; Morrice NA; Ferguson MA
    Bioinformatics; 2010 Sep; 26(17):2153-9. PubMed ID: 20651112
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reference-facilitated phosphoproteomics: fast and reliable phosphopeptide validation by microLC-ESI-Q-TOF MS/MS.
    Imanishi SY; Kochin V; Ferraris SE; de Thonel A; Pallari HM; Corthals GL; Eriksson JE
    Mol Cell Proteomics; 2007 Aug; 6(8):1380-91. PubMed ID: 17510049
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PhoStar: Identifying Tandem Mass Spectra of Phosphorylated Peptides before Database Search.
    Dorl S; Winkler S; Mechtler K; Dorfer V
    J Proteome Res; 2018 Jan; 17(1):290-295. PubMed ID: 29057658
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Support vector machines for improved peptide identification from tandem mass spectrometry database search.
    Webb-Robertson BJ
    Methods Mol Biol; 2009; 492():453-60. PubMed ID: 19241051
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Automated phosphopeptide identification using multiple MS/MS fragmentation modes.
    Vandenbogaert M; Hourdel V; Jardin-Mathé O; Bigeard J; Bonhomme L; Legros V; Hirt H; Schwikowski B; Pflieger D
    J Proteome Res; 2012 Dec; 11(12):5695-703. PubMed ID: 23094866
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Confident site localization using a simulated phosphopeptide spectral library.
    Suni V; Imanishi SY; Maiolica A; Aebersold R; Corthals GL
    J Proteome Res; 2015 May; 14(5):2348-59. PubMed ID: 25774671
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A hierarchical MS2/MS3 database search algorithm for automated analysis of phosphopeptide tandem mass spectra.
    Xu H; Wang L; Sallans L; Freitas MA
    Proteomics; 2009 Apr; 9(7):1763-70. PubMed ID: 19288523
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra.
    Chen Y; Kwon SW; Kim SC; Zhao Y
    J Proteome Res; 2005; 4(3):998-1005. PubMed ID: 15952748
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Phosphate group-driven fragmentation of multiply charged phosphopeptide anions. Improved recognition of peptides phosphorylated at serine, threonine, or tyrosine by negative ion electrospray tandem mass spectrometry.
    Edelson-Averbukh M; Pipkorn R; Lehmann WD
    Anal Chem; 2006 Feb; 78(4):1249-56. PubMed ID: 16478119
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Universal and confident phosphorylation site localization using phosphoRS.
    Taus T; Köcher T; Pichler P; Paschke C; Schmidt A; Henrich C; Mechtler K
    J Proteome Res; 2011 Dec; 10(12):5354-62. PubMed ID: 22073976
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Importance of manual validation for the identification of phosphopeptides using a linear ion trap mass spectrometer.
    Goldstrohm DA; Broeckling CD; Prenni JE; Curthoys NP
    J Biomol Tech; 2011 Apr; 22(1):10-20. PubMed ID: 21455477
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparison of alternative MS/MS and bioinformatics approaches for confident phosphorylation site localization.
    Wiese H; Kuhlmann K; Wiese S; Stoepel NS; Pawlas M; Meyer HE; Stephan C; Eisenacher M; Drepper F; Warscheid B
    J Proteome Res; 2014 Feb; 13(2):1128-37. PubMed ID: 24364495
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Effect of high-accuracy precursor masses on phosphopeptide identification from MS3 spectra.
    Timm W; Ozlu N; Steen JJ; Steen H
    Anal Chem; 2010 May; 82(10):3977-80. PubMed ID: 20426395
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Tandem mass spectrometric method for definitive localization of phosphorylation sites using bromine signature.
    Kim JS; Kim J; Oh JM; Kim HJ
    Anal Biochem; 2011 Jul; 414(2):294-6. PubMed ID: 21453673
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Estimating the Efficiency of Phosphopeptide Identification by Tandem Mass Spectrometry.
    Hsu CC; Xue L; Arrington JV; Wang P; Paez Paez JS; Zhou Y; Zhu JK; Tao WA
    J Am Soc Mass Spectrom; 2017 Jun; 28(6):1127-1135. PubMed ID: 28283928
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra.
    Yu LR; Zhu Z; Chan KC; Issaq HJ; Dimitrov DS; Veenstra TD
    J Proteome Res; 2007 Nov; 6(11):4150-62. PubMed ID: 17924679
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.