214 related articles for article (PubMed ID: 17297928)
21. An SVM scorer for more sensitive and reliable peptide identification via tandem mass spectrometry.
Wang H; Fu Y; Sun R; He S; Zeng R; Gao W
Pac Symp Biocomput; 2006; ():303-14. PubMed ID: 17094248
[TBL] [Abstract][Full Text] [Related]
22. Simultaneous quantification of protein phosphorylation sites using liquid chromatography-tandem mass spectrometry-based targeted proteomics: a linear algebra approach for isobaric phosphopeptides.
Xu F; Yang T; Sheng Y; Zhong T; Yang M; Chen Y
J Proteome Res; 2014 Dec; 13(12):5452-60. PubMed ID: 25403019
[TBL] [Abstract][Full Text] [Related]
23. Phosphorylation site localization in peptides by MALDI MS/MS and the Mascot Delta Score.
Lemeer S; Kunold E; Klaeger S; Raabe M; Towers MW; Claudes E; Arrey TN; Strupat K; Urlaub H; Kuster B
Anal Bioanal Chem; 2012 Jan; 402(1):249-60. PubMed ID: 22038583
[TBL] [Abstract][Full Text] [Related]
24. Pinpointing phosphorylation sites: Quantitative filtering and a novel site-specific x-ion fragment.
Kelstrup CD; Hekmat O; Francavilla C; Olsen JV
J Proteome Res; 2011 Jul; 10(7):2937-48. PubMed ID: 21526838
[TBL] [Abstract][Full Text] [Related]
25. Quality assessment of tandem mass spectra using support vector machine (SVM).
Zou AM; Wu FX; Ding JR; Poirier GG
BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S49. PubMed ID: 19208151
[TBL] [Abstract][Full Text] [Related]
26. Validation of endogenous peptide identifications using a database of tandem mass spectra.
Fälth M; Svensson M; Nilsson A; Sköld K; Fenyö D; Andren PE
J Proteome Res; 2008 Jul; 7(7):3049-53. PubMed ID: 18549260
[TBL] [Abstract][Full Text] [Related]
27. Femtosecond laser-induced ionization/dissociation tandem mass spectrometry (fsLID-MS/MS) of deprotonated phosphopeptide anions.
Smith SA; Kalcic CL; Cui L; Reid GE
Rapid Commun Mass Spectrom; 2013 Dec; 27(24):2807-17. PubMed ID: 24214867
[TBL] [Abstract][Full Text] [Related]
28. Integrated data management and validation platform for phosphorylated tandem mass spectrometry data.
Lahesmaa-Korpinen AM; Carlson SM; White FM; Hautaniemi S
Proteomics; 2010 Oct; 10(19):3515-24. PubMed ID: 20827731
[TBL] [Abstract][Full Text] [Related]
29. LuciPHOr: algorithm for phosphorylation site localization with false localization rate estimation using modified target-decoy approach.
Fermin D; Walmsley SJ; Gingras AC; Choi H; Nesvizhskii AI
Mol Cell Proteomics; 2013 Nov; 12(11):3409-19. PubMed ID: 23918812
[TBL] [Abstract][Full Text] [Related]
30. SimPhospho: a software tool enabling confident phosphosite assignment.
Suni V; Suomi T; Tsubosaka T; Imanishi SY; Elo LL; Corthals GL
Bioinformatics; 2018 Aug; 34(15):2690-2692. PubMed ID: 29596608
[TBL] [Abstract][Full Text] [Related]
31. Classification filtering strategy to improve the coverage and sensitivity of phosphoproteome analysis.
Jiang X; Ye M; Han G; Dong X; Zou H
Anal Chem; 2010 Jul; 82(14):6168-75. PubMed ID: 20568719
[TBL] [Abstract][Full Text] [Related]
32. PhoPepMass: A database and search tool assisting human phosphorylation peptide identification from mass spectrometry data.
Zhang M; Cui H; Chen L; Yu Y; Glocker MO; Xie L
J Genet Genomics; 2018 Jul; 45(7):381-388. PubMed ID: 30055873
[TBL] [Abstract][Full Text] [Related]
33. Phosphopeptide elution times in reversed-phase liquid chromatography.
Kim J; Petritis K; Shen Y; Camp DG; Moore RJ; Smith RD
J Chromatogr A; 2007 Nov; 1172(1):9-18. PubMed ID: 17935722
[TBL] [Abstract][Full Text] [Related]
34. Fully automatic separation and identification of phosphopeptides by continuous pH-gradient anion exchange online coupled with reversed-phase liquid chromatography mass spectrometry.
Dai J; Wang LS; Wu YB; Sheng QH; Wu JR; Shieh CH; Zeng R
J Proteome Res; 2009 Jan; 8(1):133-41. PubMed ID: 19053533
[TBL] [Abstract][Full Text] [Related]
35. Immobilized metal affinity chromatography/reversed-phase enrichment of phosphopeptides and analysis by CID/ETD tandem mass spectrometry.
Navajas R; Paradela A; Albar JP
Methods Mol Biol; 2011; 681():337-48. PubMed ID: 20978974
[TBL] [Abstract][Full Text] [Related]
36. Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases.
Sadygov RG; Liu H; Yates JR
Anal Chem; 2004 Mar; 76(6):1664-71. PubMed ID: 15018565
[TBL] [Abstract][Full Text] [Related]
37. Optimization of TripleTOF spectral simulation and library searching for confident localization of phosphorylation sites.
Takai A; Tsubosaka T; Hirano Y; Hayakawa N; Tani F; Haapaniemi P; Suni V; Imanishi SY
PLoS One; 2019; 14(12):e0225885. PubMed ID: 31790495
[TBL] [Abstract][Full Text] [Related]
38. Deriving the probabilities of water loss and ammonia loss for amino acids from tandem mass spectra.
Sun S; Yu C; Qiao Y; Lin Y; Dong G; Liu C; Zhang J; Zhang Z; Cai J; Zhang H; Bu D
J Proteome Res; 2008 Jan; 7(1):202-8. PubMed ID: 18092745
[TBL] [Abstract][Full Text] [Related]
39. Systematic evaluation of alternating CID and ETD fragmentation for phosphorylated peptides.
Kim MS; Zhong J; Kandasamy K; Delanghe B; Pandey A
Proteomics; 2011 Jun; 11(12):2568-72. PubMed ID: 21598390
[TBL] [Abstract][Full Text] [Related]
40. Charge state determination of peptide tandem mass spectra using support vector machine (SVM).
Zou AM; Shi J; Ding J; Wu FX
IEEE Trans Inf Technol Biomed; 2010 May; 14(3):552-8. PubMed ID: 20123573
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
