These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

79 related articles for article (PubMed ID: 17299775)

  • 1. Self-organizing superimposition algorithm for conformational sampling.
    Zhu F; Agrafiotis DK
    J Comput Chem; 2007 May; 28(7):1234-9. PubMed ID: 17299775
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Conformational sampling by self-organization.
    Xu H; Izrailev S; Agrafiotis DK
    J Chem Inf Comput Sci; 2003; 43(4):1186-91. PubMed ID: 12870910
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A self-organizing algorithm for molecular alignment and pharmacophore development.
    Bandyopadhyay D; Agrafiotis DK
    J Comput Chem; 2008 Apr; 29(6):965-82. PubMed ID: 17999384
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Conformational sampling with stochastic proximity embedding and self-organizing superimposition: establishing reasonable parameters for their practical use.
    Tresadern G; Agrafiotis DK
    J Chem Inf Model; 2009 Dec; 49(12):2786-800. PubMed ID: 19919051
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Conformational analysis of macrocycles: finding what common search methods miss.
    Bonnet P; Agrafiotis DK; Zhu F; Martin E
    J Chem Inf Model; 2009 Oct; 49(10):2242-59. PubMed ID: 19807090
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Sampling protein conformations and pathways.
    Lei M; Zavodszky MI; Kuhn LA; Thorpe MF
    J Comput Chem; 2004 Jul; 25(9):1133-48. PubMed ID: 15116357
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A self-organizing algorithm for modeling protein loops.
    Liu P; Zhu F; Rassokhin DN; Agrafiotis DK
    PLoS Comput Biol; 2009 Aug; 5(8):e1000478. PubMed ID: 19696883
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Conformational searching using a population-based incremental learning algorithm.
    Long SM; Tran TT; Adams P; Darwen P; Smythe ML
    J Comput Chem; 2011 Jun; 32(8):1541-9. PubMed ID: 21284005
    [TBL] [Abstract][Full Text] [Related]  

  • 9. LOOPER: a molecular mechanics-based algorithm for protein loop prediction.
    Spassov VZ; Flook PK; Yan L
    Protein Eng Des Sel; 2008 Feb; 21(2):91-100. PubMed ID: 18194981
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Analytical algorithm for molecular modeling.
    Immirzi A
    J Chem Inf Model; 2007; 47(6):2263-5. PubMed ID: 17973364
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Cluster distance geometry of polypeptide chains.
    Crippen GM
    J Comput Chem; 2004 Jul; 25(10):1305-12. PubMed ID: 15139043
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Generating conformer ensembles using a multiobjective genetic algorithm.
    Vainio MJ; Johnson MS
    J Chem Inf Model; 2007; 47(6):2462-74. PubMed ID: 17892278
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Conformational sampling for large-scale virtual screening: accuracy versus ensemble size.
    Griewel A; Kayser O; Schlosser J; Rarey M
    J Chem Inf Model; 2009 Oct; 49(10):2303-11. PubMed ID: 19788252
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bridging coarse-grained models by jump-in-sample simulations.
    Zhou X; Jiang Y; Rasmussen S; Ziock H
    J Chem Phys; 2008 May; 128(17):174107. PubMed ID: 18465910
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Recore: a fast and versatile method for scaffold hopping based on small molecule crystal structure conformations.
    Maass P; Schulz-Gasch T; Stahl M; Rarey M
    J Chem Inf Model; 2007; 47(2):390-9. PubMed ID: 17305328
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The effects of biasing torsional mutations in a conformational GA.
    Strizhev A; Abrahamian EJ; Choi S; Leonard JM; Wolohan PR; Clark RD
    J Chem Inf Model; 2006; 46(4):1862-70. PubMed ID: 16859317
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MED-3DMC: a new tool to generate 3D conformation ensembles of small molecules with a Monte Carlo sampling of the conformational space.
    Sperandio O; Souaille M; Delfaud F; Miteva MA; Villoutreix BO
    Eur J Med Chem; 2009 Apr; 44(4):1405-9. PubMed ID: 19022539
    [TBL] [Abstract][Full Text] [Related]  

  • 18. On updating torsion angles of molecular conformations.
    Choi V
    J Chem Inf Model; 2006; 46(1):438-44. PubMed ID: 16426078
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Application of geometric algebra for the description of polymer conformations.
    Chys P
    J Chem Phys; 2008 Mar; 128(10):104107. PubMed ID: 18345877
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Efficient chain moves for Monte Carlo simulations of a wormlike DNA model: excluded volume, supercoils, site juxtapositions, knots, and comparisons with random-flight and lattice models.
    Liu Z; Chan HS
    J Chem Phys; 2008 Apr; 128(14):145104. PubMed ID: 18412482
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.