BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

237 related articles for article (PubMed ID: 17302463)

  • 1. Extending the fluctuation theorem to describe reaction coordinates.
    Paramore S; Ayton GS; Voth GA
    J Chem Phys; 2007 Feb; 126(5):051102. PubMed ID: 17302463
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Hummer and Szabo-like potential of mean force estimator for bidirectional nonequilibrium pulling experiments/simulations.
    Nicolini P; Procacci P; Chelli R
    J Phys Chem B; 2010 Jul; 114(29):9546-54. PubMed ID: 20597536
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Equilibrium free energy estimates based on nonequilibrium work relations and extended dynamics.
    Atilgan E; Sun SX
    J Chem Phys; 2004 Dec; 121(21):10392-400. PubMed ID: 15549919
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality.
    Kosztin I; Barz B; Janosi L
    J Chem Phys; 2006 Feb; 124(6):64106. PubMed ID: 16483195
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A differential fluctuation theorem.
    Maragakis P; Spichty M; Karplus M
    J Phys Chem B; 2008 May; 112(19):6168-74. PubMed ID: 18331019
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Transient violations of the second law of thermodynamics in protein unfolding examined using synthetic atomic force microscopy and the fluctuation theorem.
    Paramore S; Ayton GS; Voth GA
    J Chem Phys; 2007 Sep; 127(10):105105. PubMed ID: 17867784
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Escorted free energy simulations.
    Vaikuntanathan S; Jarzynski C
    J Chem Phys; 2011 Feb; 134(5):054107. PubMed ID: 21303092
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Efficient extraction of free energy profiles from nonequilibrium experiments.
    Oberhofer H; Dellago C
    J Comput Chem; 2009 Aug; 30(11):1726-36. PubMed ID: 19408280
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Dynamic coupling between coordinates in a model for biomolecular isomerization.
    Ma A; Nag A; Dinner AR
    J Chem Phys; 2006 Apr; 124(14):144911. PubMed ID: 16626249
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Springs and speeds in free energy reconstruction from irreversible single-molecule pulling experiments.
    Minh DD; McCammon JA
    J Phys Chem B; 2008 May; 112(19):5892-7. PubMed ID: 18088108
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Entropy-energy decomposition from nonequilibrium work trajectories.
    Nummela J; Yassin F; Andricioaei I
    J Chem Phys; 2008 Jan; 128(2):024104. PubMed ID: 18205440
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A multipole-based water potential with implicit polarization for biomolecular simulations.
    Walsh TR; Liang T
    J Comput Chem; 2009 Apr; 30(6):893-9. PubMed ID: 18785240
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Continuum and discrete calculation of fractional contributions to solvation free energy.
    Morreale A; Gelpí JL; Luque FJ; Orozco M
    J Comput Chem; 2003 Oct; 24(13):1610-23. PubMed ID: 12926005
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Calculating potentials of mean force from steered molecular dynamics simulations.
    Park S; Schulten K
    J Chem Phys; 2004 Apr; 120(13):5946-61. PubMed ID: 15267476
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Models of single-molecule experiments with periodic perturbations reveal hidden dynamics in RNA folding.
    Li Y; Qu X; Ma A; Smith GJ; Scherer NF; Dinner AR
    J Phys Chem B; 2009 May; 113(21):7579-90. PubMed ID: 19415919
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Anomalous fluctuations in sliding motion of cytoskeletal filaments driven by molecular motors: model simulations.
    Imafuku Y; Mitarai N; Tawada K; Nakanishi H
    J Phys Chem B; 2008 Feb; 112(5):1487-93. PubMed ID: 18189378
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Interpretation of the Ussing flux ratio from the fluctuation theorem.
    Hsieh CP
    Biophys Chem; 2009 Jan; 139(1):57-62. PubMed ID: 18990481
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Free-energy reconstruction from experiments performed under different biasing programs.
    Minh DD
    Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Dec; 74(6 Pt 1):061120. PubMed ID: 17280051
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Quantum mechanics/molecular mechanics minimum free-energy path for accurate reaction energetics in solution and enzymes: sequential sampling and optimization on the potential of mean force surface.
    Hu H; Lu Z; Parks JM; Burger SK; Yang W
    J Chem Phys; 2008 Jan; 128(3):034105. PubMed ID: 18205486
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Calculation of absolute protein-ligand binding free energy using distributed replica sampling.
    Rodinger T; Howell PL; Pomès R
    J Chem Phys; 2008 Oct; 129(15):155102. PubMed ID: 19045232
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.