BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

306 related articles for article (PubMed ID: 17308342)

  • 1. ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors.
    Papatsenko D
    Bioinformatics; 2007 Apr; 23(8):1032-4. PubMed ID: 17308342
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SPACER: identification of cis-regulatory elements with non-contiguous critical residues.
    Chakravarty A; Carlson JM; Khetani RS; DeZiel CE; Gross RH
    Bioinformatics; 2007 Apr; 23(8):1029-31. PubMed ID: 17470480
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MUSA: a parameter free algorithm for the identification of biologically significant motifs.
    Mendes ND; Casimiro AC; Santos PM; Sá-Correia I; Oliveira AL; Freitas AT
    Bioinformatics; 2006 Dec; 22(24):2996-3002. PubMed ID: 17068086
    [TBL] [Abstract][Full Text] [Related]  

  • 4. CONREAL web server: identification and visualization of conserved transcription factor binding sites.
    Berezikov E; Guryev V; Cuppen E
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W447-50. PubMed ID: 15980509
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MotifCut: regulatory motifs finding with maximum density subgraphs.
    Fratkin E; Naughton BT; Brutlag DL; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e150-7. PubMed ID: 16873465
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Position dependencies in transcription factor binding sites.
    Tomovic A; Oakeley EJ
    Bioinformatics; 2007 Apr; 23(8):933-41. PubMed ID: 17308339
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone.
    Ng P; Nagarajan N; Jones N; Keich U
    Bioinformatics; 2006 Jul; 22(14):e393-401. PubMed ID: 16873498
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.
    Pavesi G; Mereghetti P; Zambelli F; Stefani M; Mauri G; Pesole G
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W566-70. PubMed ID: 16845071
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
    Pierstorff N; Bergman CM; Wiehe T
    Bioinformatics; 2006 Dec; 22(23):2858-64. PubMed ID: 17032682
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Predicting transcription factor binding sites using local over-representation and comparative genomics.
    Defrance M; Touzet H
    BMC Bioinformatics; 2006 Aug; 7():396. PubMed ID: 16945132
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Phylogeny based discovery of regulatory elements.
    Gertz J; Fay JC; Cohen BA
    BMC Bioinformatics; 2006 May; 7():266. PubMed ID: 16716228
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Finding motifs from all sequences with and without binding sites.
    Leung HC; Chin FY
    Bioinformatics; 2006 Sep; 22(18):2217-23. PubMed ID: 16870937
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GenomeBlast: a web tool for small genome comparison.
    Lu G; Jiang L; Helikar RM; Rowley TW; Zhang L; Chen X; Moriyama EN
    BMC Bioinformatics; 2006 Dec; 7 Suppl 4(Suppl 4):S18. PubMed ID: 17217510
    [TBL] [Abstract][Full Text] [Related]  

  • 14. TFBScluster: a resource for the characterization of transcriptional regulatory networks.
    Donaldson IJ; Chapman M; Göttgens B
    Bioinformatics; 2005 Jul; 21(13):3058-9. PubMed ID: 15855248
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A graph-based approach to systematically reconstruct human transcriptional regulatory modules.
    Yan X; Mehan MR; Huang Y; Waterman MS; Yu PS; Zhou XJ
    Bioinformatics; 2007 Jul; 23(13):i577-86. PubMed ID: 17646346
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting.
    Corcoran DL; Feingold E; Benos PV
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W442-6. PubMed ID: 15980508
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MINER: software for phylogenetic motif identification.
    La D; Livesay DR
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W267-70. PubMed ID: 15980467
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PREDetector: a new tool to identify regulatory elements in bacterial genomes.
    Hiard S; Marée R; Colson S; Hoskisson PA; Titgemeyer F; van Wezel GP; Joris B; Wehenkel L; Rigali S
    Biochem Biophys Res Commun; 2007 Jun; 357(4):861-4. PubMed ID: 17451648
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Informative priors based on transcription factor structural class improve de novo motif discovery.
    Narlikar L; Gordân R; Ohler U; Hartemink AJ
    Bioinformatics; 2006 Jul; 22(14):e384-92. PubMed ID: 16873497
    [TBL] [Abstract][Full Text] [Related]  

  • 20. BLISS 2.0: a web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences.
    Meng H; Banerjee A; Zhou L
    Bioinformatics; 2007 Dec; 23(23):3249-50. PubMed ID: 17660203
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.