BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 17339371)

  • 1. Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: comparison with high-throughput experimental data.
    Yellaboina S; Goyal K; Mande SC
    Genome Res; 2007 Apr; 17(4):527-35. PubMed ID: 17339371
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Evaluation of physical and functional protein-protein interaction prediction methods for detecting biological pathways.
    Muley VY; Ranjan A
    PLoS One; 2013; 8(1):e54325. PubMed ID: 23349851
    [TBL] [Abstract][Full Text] [Related]  

  • 3. EcoCyc: a comprehensive database resource for Escherichia coli.
    Keseler IM; Collado-Vides J; Gama-Castro S; Ingraham J; Paley S; Paulsen IT; Peralta-Gil M; Karp PD
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D334-7. PubMed ID: 15608210
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparative assessment of performance and genome dependence among phylogenetic profiling methods.
    Snitkin ES; Gustafson AM; Mellor J; Wu J; DeLisi C
    BMC Bioinformatics; 2006 Sep; 7():420. PubMed ID: 17005048
    [TBL] [Abstract][Full Text] [Related]  

  • 5. InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes.
    Sun J; Sun Y; Ding G; Liu Q; Wang C; He Y; Shi T; Li Y; Zhao Z
    BMC Bioinformatics; 2007 Oct; 8():414. PubMed ID: 17963500
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The EcoCyc Database (2023).
    Karp PD; Paley S; Caspi R; Kothari A; Krummenacker M; Midford PE; Moore LR; Subhraveti P; Gama-Castro S; Tierrafria VH; Lara P; Muñiz-Rascado L; Bonavides-Martinez C; Santos-Zavaleta A; Mackie A; Sun G; Ahn-Horst TA; Choi H; Covert MW; Collado-Vides J; Paulsen I
    EcoSal Plus; 2023 Dec; 11(1):eesp00022023. PubMed ID: 37220074
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The EcoCyc Database.
    Karp PD; Ong WK; Paley S; Billington R; Caspi R; Fulcher C; Kothari A; Krummenacker M; Latendresse M; Midford PE; Subhraveti P; Gama-Castro S; Muñiz-Rascado L; Bonavides-Martinez C; Santos-Zavaleta A; Mackie A; Collado-Vides J; Keseler IM; Paulsen I
    EcoSal Plus; 2018 Nov; 8(1):. PubMed ID: 30406744
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Interaction network containing conserved and essential protein complexes in Escherichia coli.
    Butland G; Peregrín-Alvarez JM; Li J; Yang W; Yang X; Canadien V; Starostine A; Richards D; Beattie B; Krogan N; Davey M; Parkinson J; Greenblatt J; Emili A
    Nature; 2005 Feb; 433(7025):531-7. PubMed ID: 15690043
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A novel computational framework for genome-scale alternative transcription units prediction.
    Wang Q; Liu Z; Yan B; Chou WC; Ettwiller L; Ma Q; Liu B
    Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 33957668
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Dynamic changes in protein functional linkage networks revealed by integration with gene expression data.
    Hegde SR; Manimaran P; Mande SC
    PLoS Comput Biol; 2008 Nov; 4(11):e1000237. PubMed ID: 19043542
    [TBL] [Abstract][Full Text] [Related]  

  • 11. EcID. A database for the inference of functional interactions in E. coli.
    Andres Leon E; Ezkurdia I; García B; Valencia A; Juan D
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D629-35. PubMed ID: 19004873
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities.
    Fu Y; Jarboe LR; Dickerson JA
    BMC Bioinformatics; 2011 Jun; 12():233. PubMed ID: 21668997
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Prediction of functional modules based on comparative genome analysis and Gene Ontology application.
    Wu H; Su Z; Mao F; Olman V; Xu Y
    Nucleic Acids Res; 2005; 33(9):2822-37. PubMed ID: 15901854
    [TBL] [Abstract][Full Text] [Related]  

  • 14. [Comparison of algorithms for prediction of related proteins using the method of phylogenetic profiles].
    Piatnitskiĭ MA; Lisitsa AB; Archakov AI
    Biomed Khim; 2009; 55(5):534-43. PubMed ID: 20017387
    [TBL] [Abstract][Full Text] [Related]  

  • 15. From the sequence to cell modeling: comprehensive functional genomics in Escherichia coli.
    Mori H
    J Biochem Mol Biol; 2004 Jan; 37(1):83-92. PubMed ID: 14761306
    [TBL] [Abstract][Full Text] [Related]  

  • 16. EcoCyc: a comprehensive view of Escherichia coli biology.
    Keseler IM; Bonavides-Martínez C; Collado-Vides J; Gama-Castro S; Gunsalus RP; Johnson DA; Krummenacker M; Nolan LM; Paley S; Paulsen IT; Peralta-Gil M; Santos-Zavaleta A; Shearer AG; Karp PD
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D464-70. PubMed ID: 18974181
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Detecting uber-operons in prokaryotic genomes.
    Che D; Li G; Mao F; Wu H; Xu Y
    Nucleic Acids Res; 2006; 34(8):2418-27. PubMed ID: 16682449
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Integrating Multimeric Threading With High-throughput Experiments for Structural Interactome of Escherichia coli.
    Gong W; Guerler A; Zhang C; Warner E; Li C; Zhang Y
    J Mol Biol; 2021 May; 433(10):166944. PubMed ID: 33741411
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Profiling of Escherichia coli Chromosome database.
    Yamazaki Y; Niki H; Kato J
    Methods Mol Biol; 2008; 416():385-9. PubMed ID: 18392982
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 10.