163 related articles for article (PubMed ID: 17345678)
1. Nematode small subunit phylogeny correlates with alignment parameters.
Smythe AB; Sanderson MJ; Nadler SA
Syst Biol; 2006 Dec; 55(6):972-92. PubMed ID: 17345678
[TBL] [Abstract][Full Text] [Related]
2. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments.
Talavera G; Castresana J
Syst Biol; 2007 Aug; 56(4):564-77. PubMed ID: 17654362
[TBL] [Abstract][Full Text] [Related]
3. Phylogenetic analysis of the Metastrongyloidea (Nematoda: Strongylida) inferred from ribosomal RNA gene sequences.
Carreno RA; Nadler SA
J Parasitol; 2003 Oct; 89(5):965-73. PubMed ID: 14627145
[TBL] [Abstract][Full Text] [Related]
4. Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of apicomplexa.
Morrison DA; Ellis JT
Mol Biol Evol; 1997 Apr; 14(4):428-41. PubMed ID: 9100373
[TBL] [Abstract][Full Text] [Related]
5. Evolution of the RNA polymerase B' subunit gene (rpoB') in Halobacteriales: a complementary molecular marker to the SSU rRNA gene.
Walsh DA; Bapteste E; Kamekura M; Doolittle WF
Mol Biol Evol; 2004 Dec; 21(12):2340-51. PubMed ID: 15356285
[TBL] [Abstract][Full Text] [Related]
6. Ancestral sequence alignment under optimal conditions.
Hudek AK; Brown DG
BMC Bioinformatics; 2005 Nov; 6():273. PubMed ID: 16293191
[TBL] [Abstract][Full Text] [Related]
7. Phylogenetic relationships within the cyst-forming nematodes (Nematoda, Heteroderidae) based on analysis of sequences from the ITS regions of ribosomal DNA.
Subbotin SA; Vierstraete A; De Ley P; Rowe J; Waeyenberge L; Moens M; Vanfleteren JR
Mol Phylogenet Evol; 2001 Oct; 21(1):1-16. PubMed ID: 11603932
[TBL] [Abstract][Full Text] [Related]
8. Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria.
Padial JM; Grant T; Frost DR
Zootaxa; 2014 Jun; 3825():1-132. PubMed ID: 24989881
[TBL] [Abstract][Full Text] [Related]
9. Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data.
Winchell CJ; Sullivan J; Cameron CB; Swalla BJ; Mallatt J
Mol Biol Evol; 2002 May; 19(5):762-76. PubMed ID: 11961109
[TBL] [Abstract][Full Text] [Related]
10. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
[TBL] [Abstract][Full Text] [Related]
11. Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
Hartmann S; Vision TJ
BMC Evol Biol; 2008 Mar; 8():95. PubMed ID: 18366758
[TBL] [Abstract][Full Text] [Related]
12. Reconstructing evolution from eukaryotic small-ribosomal-subunit RNA sequences: calibration of the molecular clock.
Van de Peer Y; Neefs JM; De Rijk P; De Wachter R
J Mol Evol; 1993 Aug; 37(2):221-32. PubMed ID: 8411212
[TBL] [Abstract][Full Text] [Related]
13. Visualizing phylogenetic tree landscapes.
Wilgenbusch JC; Huang W; Gallivan KA
BMC Bioinformatics; 2017 Feb; 18(1):85. PubMed ID: 28153045
[TBL] [Abstract][Full Text] [Related]
14. Exploring the relationship between sequence similarity and accurate phylogenetic trees.
Cantarel BL; Morrison HG; Pearson W
Mol Biol Evol; 2006 Nov; 23(11):2090-100. PubMed ID: 16891377
[TBL] [Abstract][Full Text] [Related]
15. Small subunit ribosomal DNA phylogeny of microsporidia with particular reference to genera that infect fish.
Nilsen F
J Parasitol; 2000 Feb; 86(1):128-33. PubMed ID: 10701575
[TBL] [Abstract][Full Text] [Related]
16. The impact of rRNA secondary structure consideration in alignment and tree reconstruction: simulated data and a case study on the phylogeny of hexapods.
Letsch HO; Kück P; Stocsits RR; Misof B
Mol Biol Evol; 2010 Nov; 27(11):2507-21. PubMed ID: 20530152
[TBL] [Abstract][Full Text] [Related]
17. Small subunit ribosomal RNA genes of tabanids and hippoboscids (Diptera: Brachycera): evolutionary relationships and comparison with other Diptera.
Carreno RA; Barta JR
J Med Entomol; 1998 Nov; 35(6):1002-6. PubMed ID: 9835693
[TBL] [Abstract][Full Text] [Related]
18. Alignment and topological accuracy of the direct optimization approach via POY and traditional phylogenetics via ClustalW + PAUP*.
Ogden TH; Rosenberg MS
Syst Biol; 2007 Apr; 56(2):182-93. PubMed ID: 17454974
[TBL] [Abstract][Full Text] [Related]
19. Testing the new animal phylogeny: first use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes.
Mallatt J; Winchell CJ
Mol Biol Evol; 2002 Mar; 19(3):289-301. PubMed ID: 11861888
[TBL] [Abstract][Full Text] [Related]
20. Empirical models for substitution in ribosomal RNA.
Smith AD; Lui TW; Tillier ER
Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
