These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
6. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. MacIsaac KD; Wang T; Gordon DB; Gifford DK; Stormo GD; Fraenkel E BMC Bioinformatics; 2006 Mar; 7():113. PubMed ID: 16522208 [TBL] [Abstract][Full Text] [Related]
7. Predicting genetic regulatory response using classification. Middendorf M; Kundaje A; Wiggins C; Freund Y; Leslie C Bioinformatics; 2004 Aug; 20 Suppl 1():i232-40. PubMed ID: 15262804 [TBL] [Abstract][Full Text] [Related]
8. Reverse engineering module networks by PSO-RNN hybrid modeling. Zhang Y; Xuan J; de los Reyes BG; Clarke R; Ressom HW BMC Genomics; 2009 Jul; 10 Suppl 1(Suppl 1):S15. PubMed ID: 19594874 [TBL] [Abstract][Full Text] [Related]
9. Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors. Yu X; Lin J; Zack DJ; Qian J BMC Bioinformatics; 2007 Nov; 8():437. PubMed ID: 17996093 [TBL] [Abstract][Full Text] [Related]
10. Network perturbation by recurrent regulatory variants in cancer. Jang K; Kim K; Cho A; Lee I; Choi JK PLoS Comput Biol; 2017 Mar; 13(3):e1005449. PubMed ID: 28333928 [TBL] [Abstract][Full Text] [Related]
11. Computational detection of cis -regulatory modules. Aerts S; Van Loo P; Thijs G; Moreau Y; De Moor B Bioinformatics; 2003 Oct; 19 Suppl 2():ii5-14. PubMed ID: 14534164 [TBL] [Abstract][Full Text] [Related]
12. Reconstructing Genetic Regulatory Networks Using Two-Step Algorithms with the Differential Equation Models of Neural Networks. Chen CK Interdiscip Sci; 2018 Dec; 10(4):823-835. PubMed ID: 28748400 [TBL] [Abstract][Full Text] [Related]
13. Learning probabilistic models of cis-regulatory modules that represent logical and spatial aspects. Noto K; Craven M Bioinformatics; 2007 Jan; 23(2):e156-62. PubMed ID: 17237085 [TBL] [Abstract][Full Text] [Related]
14. Inferring quantitative models of regulatory networks from expression data. Nachman I; Regev A; Friedman N Bioinformatics; 2004 Aug; 20 Suppl 1():i248-56. PubMed ID: 15262806 [TBL] [Abstract][Full Text] [Related]
15. BLISS 2.0: a web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences. Meng H; Banerjee A; Zhou L Bioinformatics; 2007 Dec; 23(23):3249-50. PubMed ID: 17660203 [TBL] [Abstract][Full Text] [Related]
16. Combining sequence and time series expression data to learn transcriptional modules. Kundaje A; Middendorf M; Gao F; Wiggins C; Leslie C IEEE/ACM Trans Comput Biol Bioinform; 2005; 2(3):194-202. PubMed ID: 17044183 [TBL] [Abstract][Full Text] [Related]
17. Computational discovery of gene modules and regulatory networks. Bar-Joseph Z; Gerber GK; Lee TI; Rinaldi NJ; Yoo JY; Robert F; Gordon DB; Fraenkel E; Jaakkola TS; Young RA; Gifford DK Nat Biotechnol; 2003 Nov; 21(11):1337-42. PubMed ID: 14555958 [TBL] [Abstract][Full Text] [Related]
18. In silico modelling of hormone response elements. Stepanova M; Lin F; Lin VC BMC Bioinformatics; 2006 Dec; 7 Suppl 4(Suppl 4):S27. PubMed ID: 17217520 [TBL] [Abstract][Full Text] [Related]
19. Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach. Ma HW; Buer J; Zeng AP BMC Bioinformatics; 2004 Dec; 5():199. PubMed ID: 15603590 [TBL] [Abstract][Full Text] [Related]