178 related articles for article (PubMed ID: 17369271)
1. Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments.
Przybylski D; Rost B
Nucleic Acids Res; 2007; 35(7):2238-46. PubMed ID: 17369271
[TBL] [Abstract][Full Text] [Related]
2. Powerful fusion: PSI-BLAST and consensus sequences.
Przybylski D; Rost B
Bioinformatics; 2008 Sep; 24(18):1987-93. PubMed ID: 18678588
[TBL] [Abstract][Full Text] [Related]
3. A comparison of scoring functions for protein sequence profile alignment.
Edgar RC; Sjölander K
Bioinformatics; 2004 May; 20(8):1301-8. PubMed ID: 14962936
[TBL] [Abstract][Full Text] [Related]
4. Large-scale comparison of protein sequence alignment algorithms with structure alignments.
Sauder JM; Arthur JW; Dunbrack RL
Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826
[TBL] [Abstract][Full Text] [Related]
5. PROMALS web server for accurate multiple protein sequence alignments.
Pei J; Kim BH; Tang M; Grishin NV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345
[TBL] [Abstract][Full Text] [Related]
6. High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.
Teichert F; Minning J; Bastolla U; Porto M
BMC Bioinformatics; 2010 May; 11():251. PubMed ID: 20470364
[TBL] [Abstract][Full Text] [Related]
7. A performance enhanced PSI-BLAST based on hybrid alignment.
Li Y; Chia N; Lauria M; Bundschuh R
Bioinformatics; 2011 Jan; 27(1):31-7. PubMed ID: 21115441
[TBL] [Abstract][Full Text] [Related]
8. COACH: profile-profile alignment of protein families using hidden Markov models.
Edgar RC; Sjölander K
Bioinformatics; 2004 May; 20(8):1309-18. PubMed ID: 14962937
[TBL] [Abstract][Full Text] [Related]
9. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: validation.
Stevens FJ
J Mol Recognit; 2005; 18(2):139-49. PubMed ID: 15558595
[TBL] [Abstract][Full Text] [Related]
10. Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.
Yona G; Levitt M
J Mol Biol; 2002 Feb; 315(5):1257-75. PubMed ID: 11827492
[TBL] [Abstract][Full Text] [Related]
11. FastBLAST: homology relationships for millions of proteins.
Price MN; Dehal PS; Arkin AP
PLoS One; 2008; 3(10):e3589. PubMed ID: 18974889
[TBL] [Abstract][Full Text] [Related]
12. PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance.
Agrawal A; Huang X
Bioinformatics; 2009 Apr; 25(8):1082-3. PubMed ID: 19251771
[TBL] [Abstract][Full Text] [Related]
13. PSI-Search: iterative HOE-reduced profile SSEARCH searching.
Li W; McWilliam H; Goujon M; Cowley A; Lopez R; Pearson WR
Bioinformatics; 2012 Jun; 28(12):1650-1. PubMed ID: 22539666
[TBL] [Abstract][Full Text] [Related]
14. Identification of new claudin family members by a novel PSI-BLAST based approach with enhanced specificity.
Wu J; Helftenbein G; Koslowski M; Sahin U; Tureci O
Proteins; 2006 Dec; 65(4):808-15. PubMed ID: 17022085
[TBL] [Abstract][Full Text] [Related]
15. PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability.
Margelevicius M; Venclovas C
BMC Bioinformatics; 2005 Jul; 6():185. PubMed ID: 16033659
[TBL] [Abstract][Full Text] [Related]
16. (PS)2: protein structure prediction server.
Chen CC; Hwang JK; Yang JM
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W152-7. PubMed ID: 16844981
[TBL] [Abstract][Full Text] [Related]
17. Incremental window-based protein sequence alignment algorithms.
Rangwala H; Karypis G
Bioinformatics; 2007 Jan; 23(2):e17-23. PubMed ID: 17237087
[TBL] [Abstract][Full Text] [Related]
18. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
19. Discriminative modelling of context-specific amino acid substitution probabilities.
Angermüller C; Biegert A; Söding J
Bioinformatics; 2012 Dec; 28(24):3240-7. PubMed ID: 23080114
[TBL] [Abstract][Full Text] [Related]
20. COMPASS server for remote homology inference.
Sadreyev RI; Tang M; Kim BH; Grishin NV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W653-8. PubMed ID: 17517780
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
