133 related articles for article (PubMed ID: 17369629)
1. Efficient annotation of non-coding RNA structures including pseudoknots via automated filters.
Liu C; Song Y; Hu P; Malmberg RL; Cai L
Comput Syst Bioinformatics Conf; 2006; ():99-110. PubMed ID: 17369629
[TBL] [Abstract][Full Text] [Related]
2. Sequence-based heuristics for faster annotation of non-coding RNA families.
Weinberg Z; Ruzzo WL
Bioinformatics; 2006 Jan; 22(1):35-9. PubMed ID: 16267089
[TBL] [Abstract][Full Text] [Related]
3. An efficient alignment algorithm for searching simple pseudoknots over long genomic sequence.
Ma C; Wong TK; Lam TW; Hon WK; Sadakane K; Yiu SM
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(6):1629-38. PubMed ID: 22848134
[TBL] [Abstract][Full Text] [Related]
4. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
[TBL] [Abstract][Full Text] [Related]
5. Designing filters for fast-known NcRNA identification.
Sun Y; Buhler J; Yuan C
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(3):774-87. PubMed ID: 22084145
[TBL] [Abstract][Full Text] [Related]
6. Efficient known ncRNA search including pseudoknots.
Yuan C; Sun Y
BMC Bioinformatics; 2013; 14 Suppl 2(Suppl 2):S25. PubMed ID: 23369049
[TBL] [Abstract][Full Text] [Related]
7. Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots.
Song Y; Liu C; Malmberg RL; He C; Cai L
Int J Bioinform Res Appl; 2006; 2(3):289-304. PubMed ID: 18048167
[TBL] [Abstract][Full Text] [Related]
8. Prediction of consensus RNA secondary structures including pseudoknots.
Witwer C; Hofacker IL; Stadler PF
IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(2):66-77. PubMed ID: 17048382
[TBL] [Abstract][Full Text] [Related]
9. Structural alignment of pseudoknotted RNA.
Han B; Dost B; Bafna V; Zhang S
J Comput Biol; 2008 Jun; 15(5):489-504. PubMed ID: 18549303
[TBL] [Abstract][Full Text] [Related]
10. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
[TBL] [Abstract][Full Text] [Related]
11. Fast and accurate search for non-coding RNA pseudoknot structures in genomes.
Huang Z; Wu Y; Robertson J; Feng L; Malmberg RL; Cai L
Bioinformatics; 2008 Oct; 24(20):2281-7. PubMed ID: 18687694
[TBL] [Abstract][Full Text] [Related]
12. Designing secondary structure profiles for fast ncRNA identification.
Sun Y; Buhler J
Comput Syst Bioinformatics Conf; 2008; 7():145-56. PubMed ID: 19642276
[TBL] [Abstract][Full Text] [Related]
13. Class-specific prediction of ncRNAs.
Stadler PF
Methods Mol Biol; 2014; 1097():199-213. PubMed ID: 24639161
[TBL] [Abstract][Full Text] [Related]
14. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Bioinformatics; 2005 Jun; 21(11):2611-7. PubMed ID: 15784748
[TBL] [Abstract][Full Text] [Related]
15. Tree decomposition based fast search of RNA structures including pseudoknots in genomes.
Song Y; Liu C; Malmberg R; Pan F; Cai L
Proc IEEE Comput Syst Bioinform Conf; 2005; ():223-34. PubMed ID: 16447980
[TBL] [Abstract][Full Text] [Related]
16. Rapid ab initio prediction of RNA pseudoknots via graph tree decomposition.
Zhao J; Malmberg RL; Cai L
J Math Biol; 2008 Jan; 56(1-2):145-59. PubMed ID: 17906862
[TBL] [Abstract][Full Text] [Related]
17. A method for aligning RNA secondary structures and its application to RNA motif detection.
Liu J; Wang JT; Hu J; Tian B
BMC Bioinformatics; 2005 Apr; 6():89. PubMed ID: 15817128
[TBL] [Abstract][Full Text] [Related]
18. PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots.
Byun Y; Han K
Bioinformatics; 2009 Jun; 25(11):1435-7. PubMed ID: 19369500
[TBL] [Abstract][Full Text] [Related]
19. Pairwise RNA secondary structure alignment with conserved stem pattern.
Chiu JK; Chen YP
Bioinformatics; 2015 Dec; 31(24):3914-21. PubMed ID: 26275897
[TBL] [Abstract][Full Text] [Related]
20. Alignment-free comparative genomic screen for structured RNAs using coarse-grained secondary structure dot plots.
Kato Y; Gorodkin J; Havgaard JH
BMC Genomics; 2017 Dec; 18(1):935. PubMed ID: 29197323
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]