257 related articles for article (PubMed ID: 17369630)
1. Thermodynamic matchers: strengthening the significance of RNA folding energies.
Höchsmann T; Höchsmann M; Giegerich R
Comput Syst Bioinformatics Conf; 2006; ():111-21. PubMed ID: 17369630
[TBL] [Abstract][Full Text] [Related]
2. Thermodynamic matchers for the construction of the cuckoo RNA family.
Reinkensmeier J; Giegerich R
RNA Biol; 2015; 12(2):197-207. PubMed ID: 25779873
[TBL] [Abstract][Full Text] [Related]
3. Secondary structure prediction of interacting RNA molecules.
Andronescu M; Zhang ZC; Condon A
J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
[TBL] [Abstract][Full Text] [Related]
4. Thermodynamic heuristics with case-based reasoning: combined insights for RNA pseudoknot secondary structure.
Al-Khatib RM; Rashid NA; Abdullah R
J Biomol Struct Dyn; 2011 Aug; 29(1):1-26. PubMed ID: 21696223
[TBL] [Abstract][Full Text] [Related]
5. Reconstruction of natural RNA sequences from RNA shape, thermodynamic stability, mutational robustness, and linguistic complexity by evolutionary computation.
Dromi N; Avihoo A; Barash D
J Biomol Struct Dyn; 2008 Aug; 26(1):147-62. PubMed ID: 18533734
[TBL] [Abstract][Full Text] [Related]
6. Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency.
Clote P; Ferré F; Kranakis E; Krizanc D
RNA; 2005 May; 11(5):578-91. PubMed ID: 15840812
[TBL] [Abstract][Full Text] [Related]
7. Computer-Aided Design of Active Pseudoknotted Hammerhead Ribozymes.
Najeh S; Zandi K; Djerroud S; Kharma N; Perreault J
Methods Mol Biol; 2021; 2167():91-111. PubMed ID: 32712917
[TBL] [Abstract][Full Text] [Related]
8. The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures.
Gruber AR; Neuböck R; Hofacker IL; Washietl S
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W335-8. PubMed ID: 17452347
[TBL] [Abstract][Full Text] [Related]
9. Using RNAFOLD to predict the activity of small catalytic RNAs.
Denman RB
Biotechniques; 1993 Dec; 15(6):1090-5. PubMed ID: 8292343
[TBL] [Abstract][Full Text] [Related]
10. Energy-based RNA consensus secondary structure prediction in multiple sequence alignments.
Washietl S; Bernhart SH; Kellis M
Methods Mol Biol; 2014; 1097():125-41. PubMed ID: 24639158
[TBL] [Abstract][Full Text] [Related]
11. Thermodynamic and kinetic folding of riboswitches.
Badelt S; Hammer S; Flamm C; Hofacker IL
Methods Enzymol; 2015; 553():193-213. PubMed ID: 25726466
[TBL] [Abstract][Full Text] [Related]
12. On the normalization of the minimum free energy of RNAs by sequence length.
Trotta E
PLoS One; 2014; 9(11):e113380. PubMed ID: 25405875
[TBL] [Abstract][Full Text] [Related]
13. Consensus folding of unaligned RNA sequences revisited.
Bafna V; Tang H; Zhang S
J Comput Biol; 2006 Mar; 13(2):283-95. PubMed ID: 16597240
[TBL] [Abstract][Full Text] [Related]
14. Analysis of the free energy in a stochastic RNA secondary structure model.
Nebel ME; Scheid A
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(6):1468-82. PubMed ID: 21116040
[TBL] [Abstract][Full Text] [Related]
15. Prediction of RNA secondary structure by free energy minimization.
Mathews DH; Turner DH
Curr Opin Struct Biol; 2006 Jun; 16(3):270-8. PubMed ID: 16713706
[TBL] [Abstract][Full Text] [Related]
16. SCFGs in RNA secondary structure prediction RNA secondary structure prediction: a hands-on approach.
Sükösd Z; Andersen ES; Lyngsø R
Methods Mol Biol; 2014; 1097():143-62. PubMed ID: 24639159
[TBL] [Abstract][Full Text] [Related]
17. Prediction of consensus RNA secondary structures including pseudoknots.
Witwer C; Hofacker IL; Stadler PF
IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(2):66-77. PubMed ID: 17048382
[TBL] [Abstract][Full Text] [Related]
18. An RNA folding algorithm including pseudoknots based on dynamic weighted matching.
Liu H; Xu D; Shao J; Wang Y
Comput Biol Chem; 2006 Feb; 30(1):72-6. PubMed ID: 16321572
[TBL] [Abstract][Full Text] [Related]
19. Moments of the Boltzmann distribution for RNA secondary structures.
Miklós I; Meyer IM; Nagy B
Bull Math Biol; 2005 Sep; 67(5):1031-47. PubMed ID: 15998494
[TBL] [Abstract][Full Text] [Related]
20. Energy-directed RNA structure prediction.
Hofacker IL
Methods Mol Biol; 2014; 1097():71-84. PubMed ID: 24639155
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
