These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

98 related articles for article (PubMed ID: 17380507)

  • 1. Fast and reliable analysis of molecular motion using proximity relations and dimensionality reduction.
    Plaku E; Stamati H; Clementi C; Kavraki LE
    Proteins; 2007 Jun; 67(4):897-907. PubMed ID: 17380507
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protein folding by motion planning.
    Thomas S; Song G; Amato NM
    Phys Biol; 2005 Nov; 2(4):S148-55. PubMed ID: 16280620
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Understanding the role of the topology in protein folding by computational inverse folding experiments.
    Mucherino A; Costantini S; di Serafino D; D'Apuzzo M; Facchiano A; Colonna G
    Comput Biol Chem; 2008 Aug; 32(4):233-9. PubMed ID: 18479970
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Free-energy-driven folding and thermodynamics of the 67-residue protein GS-alpha3W--a large-scale Monte Carlo study.
    Meinke JH; Hansmann UH
    J Comput Chem; 2009 Aug; 30(11):1642-8. PubMed ID: 19499540
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Characterization of protein-folding pathways by reduced-space modeling.
    Kmiecik S; Kolinski A
    Proc Natl Acad Sci U S A; 2007 Jul; 104(30):12330-5. PubMed ID: 17636132
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
    Chen K; Kurgan L
    Bioinformatics; 2007 Nov; 23(21):2843-50. PubMed ID: 17942446
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Kinetics analysis methods for approximate folding landscapes.
    Tapia L; Tang X; Thomas S; Amato NM
    Bioinformatics; 2007 Jul; 23(13):i539-48. PubMed ID: 17646341
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Congruent qualitative behavior of complete and reconstructed phase space trajectories from biomolecular dynamics simulation.
    Caves LS; Verma CS
    Proteins; 2002 Apr; 47(1):25-30. PubMed ID: 11870862
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Metadynamics in the conformational space nonlinearly dimensionally reduced by Isomap.
    Spiwok V; Králová B
    J Chem Phys; 2011 Dec; 135(22):224504. PubMed ID: 22168700
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Robotic path planning and protein complex modeling considering low frequency intra-molecular loop and domain motions.
    Del Carpio CA; Qiang P; Ichiishi E; Tsuboi H; Koyama M; Hatakeyama N; Endou A; Takaba H; Kubo M; Miyamoto A
    Genome Inform; 2006; 17(2):270-8. PubMed ID: 17503399
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Nonlinear vs. linear biasing in Trp-cage folding simulations.
    Spiwok V; Oborský P; Pazúriková J; Křenek A; Králová B
    J Chem Phys; 2015 Mar; 142(11):115101. PubMed ID: 25796266
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Analyzing large-scale structural change in proteins: comparison of principal component projection and Sammon mapping.
    Mesentean S; Fischer S; Smith JC
    Proteins; 2006 Jul; 64(1):210-8. PubMed ID: 16617427
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Controlling protein molecular dynamics: how to accelerate folding while preserving the native state.
    Jensen CH; Nerukh D; Glen RC
    J Chem Phys; 2008 Dec; 129(22):225102. PubMed ID: 19071948
    [TBL] [Abstract][Full Text] [Related]  

  • 14. All-atom de novo protein folding with a scalable evolutionary algorithm.
    Verma A; Gopal SM; Oh JS; Lee KH; Wenzel W
    J Comput Chem; 2007 Dec; 28(16):2552-8. PubMed ID: 17486550
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Conformational states and folding pathways of peptides revealed by principal-independent component analyses.
    Nguyen PH
    Proteins; 2007 May; 67(3):579-92. PubMed ID: 17348012
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Long-timescale molecular dynamics simulations of protein structure and function.
    Klepeis JL; Lindorff-Larsen K; Dror RO; Shaw DE
    Curr Opin Struct Biol; 2009 Apr; 19(2):120-7. PubMed ID: 19361980
    [TBL] [Abstract][Full Text] [Related]  

  • 17. [Simulation of alpha-helix and beta-hairpin formation in water-soluble proteins by the code physics method].
    Shestopalov BV
    Tsitologiia; 2007; 49(7):594-600. PubMed ID: 17918344
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Full correlation analysis of conformational protein dynamics.
    Lange OF; Grubmüller H
    Proteins; 2008 Mar; 70(4):1294-312. PubMed ID: 17876828
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Sampling of near-native protein conformations during protein structure refinement using a coarse-grained model, normal modes, and molecular dynamics simulations.
    Stumpff-Kane AW; Maksimiak K; Lee MS; Feig M
    Proteins; 2008 Mar; 70(4):1345-56. PubMed ID: 17876825
    [TBL] [Abstract][Full Text] [Related]  

  • 20. New perspectives on multiple-copy, mean-field molecular dynamics methods.
    Hixson CA; Chen J; Huang Z; Wheeler RA
    J Mol Graph Model; 2004 May; 22(5):349-57. PubMed ID: 15099831
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.