86 related articles for article (PubMed ID: 17381175)
21. Protein structure prediction based on sequence similarity.
Jaroszewski L
Methods Mol Biol; 2009; 569():129-56. PubMed ID: 19623489
[TBL] [Abstract][Full Text] [Related]
22. Kernel approach to molecular similarity based on iterative graph similarity.
Rupp M; Proschak E; Schneider G
J Chem Inf Model; 2007; 47(6):2280-6. PubMed ID: 17985866
[TBL] [Abstract][Full Text] [Related]
23. LOOPER: a molecular mechanics-based algorithm for protein loop prediction.
Spassov VZ; Flook PK; Yan L
Protein Eng Des Sel; 2008 Feb; 21(2):91-100. PubMed ID: 18194981
[TBL] [Abstract][Full Text] [Related]
24. From molecular to biological structure and back.
Bonchev D; Buck GA
J Chem Inf Model; 2007; 47(3):909-17. PubMed ID: 17407281
[TBL] [Abstract][Full Text] [Related]
25. Importance of molecular computer modeling in anticancer drug development.
Geromichalos GD
J BUON; 2007 Sep; 12 Suppl 1():S101-18. PubMed ID: 17935268
[TBL] [Abstract][Full Text] [Related]
26. Protein sequence design based on the topology of the native state structure.
Jha AN; Ananthasuresh GK; Vishveshwara S
J Theor Biol; 2007 Sep; 248(1):81-90. PubMed ID: 17543996
[TBL] [Abstract][Full Text] [Related]
27. Flexible 3D pharmacophores as descriptors of dynamic biological space.
Nettles JH; Jenkins JL; Williams C; Clark AM; Bender A; Deng Z; Davies JW; Glick M
J Mol Graph Model; 2007 Oct; 26(3):622-33. PubMed ID: 17395510
[TBL] [Abstract][Full Text] [Related]
28. BSAlign: a rapid graph-based algorithm for detecting ligand-binding sites in protein structures.
Aung Z; Tong JC
Genome Inform; 2008; 21():65-76. PubMed ID: 19425148
[TBL] [Abstract][Full Text] [Related]
29. Quantum similarity superposition algorithm (QSSA): a consistent scheme for molecular alignment and molecular similarity based on quantum chemistry.
Bultinck P; Kuppens T; Gironés X; Carbó-Dorca R
J Chem Inf Comput Sci; 2003; 43(4):1143-50. PubMed ID: 12870905
[TBL] [Abstract][Full Text] [Related]
30. Unconventional 2D shape similarity method affords comparable enrichment as a 3D shape method in virtual screening experiments.
Ebalunode JO; Zheng W
J Chem Inf Model; 2009 Jun; 49(6):1313-20. PubMed ID: 19480404
[TBL] [Abstract][Full Text] [Related]
31. Integrated search and alignment of protein structures.
Sacan A; Toroslu IH; Ferhatosmanoglu H
Bioinformatics; 2008 Dec; 24(24):2872-9. PubMed ID: 18945684
[TBL] [Abstract][Full Text] [Related]
32. Novel method for generating structure-based pharmacophores using energetic analysis.
Salam NK; Nuti R; Sherman W
J Chem Inf Model; 2009 Oct; 49(10):2356-68. PubMed ID: 19761201
[TBL] [Abstract][Full Text] [Related]
33. Fast and efficient in silico 3D screening: toward maximum computational efficiency of pharmacophore-based and shape-based approaches.
Kirchmair J; Ristic S; Eder K; Markt P; Wolber G; Laggner C; Langer T
J Chem Inf Model; 2007; 47(6):2182-96. PubMed ID: 17929799
[TBL] [Abstract][Full Text] [Related]
34. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
Fromer M; Yanover C
Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
[TBL] [Abstract][Full Text] [Related]
35. A simple genetic algorithm for multiple sequence alignment.
Gondro C; Kinghorn BP
Genet Mol Res; 2007 Oct; 6(4):964-82. PubMed ID: 18058716
[TBL] [Abstract][Full Text] [Related]
36. A strategy for predicting the crystal structures of flexible molecules: the polymorphism of phenobarbital.
Day GM; S Motherwell WD; Jones W
Phys Chem Chem Phys; 2007 Apr; 9(14):1693-704. PubMed ID: 17396181
[TBL] [Abstract][Full Text] [Related]
37. Computed protonation properties: unique capabilities for protein functional site prediction.
Murga LF; Wei Y; Ondrechen MJ
Genome Inform; 2007; 19():107-18. PubMed ID: 18546509
[TBL] [Abstract][Full Text] [Related]
38. FLAME: a program to flexibly align molecules.
Cho SJ; Sun Y
J Chem Inf Model; 2006; 46(1):298-306. PubMed ID: 16426065
[TBL] [Abstract][Full Text] [Related]
39. Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis.
Masso M; Vaisman II
Bioinformatics; 2008 Sep; 24(18):2002-9. PubMed ID: 18632749
[TBL] [Abstract][Full Text] [Related]
40. Computational chemistry comparison of stable/nonstable protein mutants classification models based on 3D and topological indices.
González-Díaz H; Pérez-Castillo Y; Podda G; Uriarte E
J Comput Chem; 2007 Sep; 28(12):1990-5. PubMed ID: 17450569
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
