These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
182 related articles for article (PubMed ID: 17384062)
1. Molecular dynamics simulations using temperature-enhanced essential dynamics replica exchange. Kubitzki MB; de Groot BL Biophys J; 2007 Jun; 92(12):4262-70. PubMed ID: 17384062 [TBL] [Abstract][Full Text] [Related]
2. Modified replica exchange simulation methods for local structure refinement. Cheng X; Cui G; Hornak V; Simmerling C J Phys Chem B; 2005 Apr; 109(16):8220-30. PubMed ID: 16851961 [TBL] [Abstract][Full Text] [Related]
3. Replica exchange molecular dynamics method for protein folding simulation. Zhou R Methods Mol Biol; 2007; 350():205-23. PubMed ID: 16957325 [TBL] [Abstract][Full Text] [Related]
4. Convergence and sampling efficiency in replica exchange simulations of peptide folding in explicit solvent. Periole X; Mark AE J Chem Phys; 2007 Jan; 126(1):014903. PubMed ID: 17212515 [TBL] [Abstract][Full Text] [Related]
5. Adaptive conformational sampling based on replicas. Curuksu J J Math Biol; 2012 May; 64(6):917-31. PubMed ID: 21656010 [TBL] [Abstract][Full Text] [Related]
6. Enhanced sampling of peptide and protein conformations using replica exchange simulations with a peptide backbone biasing-potential. Kannan S; Zacharias M Proteins; 2007 Feb; 66(3):697-706. PubMed ID: 17120231 [TBL] [Abstract][Full Text] [Related]
7. Generalized-ensemble algorithms: enhanced sampling techniques for Monte Carlo and molecular dynamics simulations. Okamoto Y J Mol Graph Model; 2004 May; 22(5):425-39. PubMed ID: 15099838 [TBL] [Abstract][Full Text] [Related]
8. TIGER2: an improved algorithm for temperature intervals with global exchange of replicas. Li X; Latour RA; Stuart SJ J Chem Phys; 2009 May; 130(17):174106. PubMed ID: 19425768 [TBL] [Abstract][Full Text] [Related]
9. MuSTAR MD: multi-scale sampling using temperature accelerated and replica exchange molecular dynamics. Yamamori Y; Kitao A J Chem Phys; 2013 Oct; 139(14):145105. PubMed ID: 24116651 [TBL] [Abstract][Full Text] [Related]