These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
159 related articles for article (PubMed ID: 17387112)
1. A sequential Monte Carlo EM approach to the transcription factor binding site identification problem. Jackson ES; Fitzgerald WJ Bioinformatics; 2007 Jun; 23(11):1313-20. PubMed ID: 17387112 [TBL] [Abstract][Full Text] [Related]
2. A profile-based deterministic sequential Monte Carlo algorithm for motif discovery. Liang KC; Wang X; Anastassiou D Bioinformatics; 2008 Jan; 24(1):46-55. PubMed ID: 18024972 [TBL] [Abstract][Full Text] [Related]
3. A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length. Favorov AV; Gelfand MS; Gerasimova AV; Ravcheev DA; Mironov AA; Makeev VJ Bioinformatics; 2005 May; 21(10):2240-5. PubMed ID: 15728117 [TBL] [Abstract][Full Text] [Related]
5. Finding motifs from all sequences with and without binding sites. Leung HC; Chin FY Bioinformatics; 2006 Sep; 22(18):2217-23. PubMed ID: 16870937 [TBL] [Abstract][Full Text] [Related]
6. Informative priors based on transcription factor structural class improve de novo motif discovery. Narlikar L; Gordân R; Ohler U; Hartemink AJ Bioinformatics; 2006 Jul; 22(14):e384-92. PubMed ID: 16873497 [TBL] [Abstract][Full Text] [Related]
7. MotifCut: regulatory motifs finding with maximum density subgraphs. Fratkin E; Naughton BT; Brutlag DL; Batzoglou S Bioinformatics; 2006 Jul; 22(14):e150-7. PubMed ID: 16873465 [TBL] [Abstract][Full Text] [Related]
8. TFBS identification based on genetic algorithm with combined representations and adaptive post-processing. Chan TM; Leung KS; Lee KH Bioinformatics; 2008 Feb; 24(3):341-9. PubMed ID: 18065426 [TBL] [Abstract][Full Text] [Related]
9. MUSA: a parameter free algorithm for the identification of biologically significant motifs. Mendes ND; Casimiro AC; Santos PM; Sá-Correia I; Oliveira AL; Freitas AT Bioinformatics; 2006 Dec; 22(24):2996-3002. PubMed ID: 17068086 [TBL] [Abstract][Full Text] [Related]
10. Context-specific independence mixture modeling for positional weight matrices. Georgi B; Schliep A Bioinformatics; 2006 Jul; 22(14):e166-73. PubMed ID: 16873468 [TBL] [Abstract][Full Text] [Related]
11. PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. Siddharthan R; Siggia ED; van Nimwegen E PLoS Comput Biol; 2005 Dec; 1(7):e67. PubMed ID: 16477324 [TBL] [Abstract][Full Text] [Related]
12. A multiple-feature framework for modelling and predicting transcription factor binding sites. Pudimat R; Schukat-Talamazzini EG; Backofen R Bioinformatics; 2005 Jul; 21(14):3082-8. PubMed ID: 15905283 [TBL] [Abstract][Full Text] [Related]
13. On counting position weight matrix matches in a sequence, with application to discriminative motif finding. Sinha S Bioinformatics; 2006 Jul; 22(14):e454-63. PubMed ID: 16873507 [TBL] [Abstract][Full Text] [Related]
14. A Monte Carlo EM algorithm for de novo motif discovery in biomolecular sequences. Bi C IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(3):370-86. PubMed ID: 19644166 [TBL] [Abstract][Full Text] [Related]
15. Simultaneous alignment and annotation of cis-regulatory regions. Bais AS; Grossmann S; Vingron M Bioinformatics; 2007 Jan; 23(2):e44-9. PubMed ID: 17237103 [TBL] [Abstract][Full Text] [Related]
16. Modeling within-motif dependence for transcription factor binding site predictions. Zhou Q; Liu JS Bioinformatics; 2004 Apr; 20(6):909-16. PubMed ID: 14751969 [TBL] [Abstract][Full Text] [Related]
17. A new approach to the assessment of the quality of predictions of transcription factor binding sites. Nowakowski S; Tiuryn J J Biomed Inform; 2007 Apr; 40(2):139-49. PubMed ID: 16949346 [TBL] [Abstract][Full Text] [Related]
18. Memetic algorithms for de novo motif-finding in biomedical sequences. Bi C Artif Intell Med; 2012 Sep; 56(1):1-17. PubMed ID: 22613029 [TBL] [Abstract][Full Text] [Related]
19. A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. Li L; Cheng AS; Jin VX; Paik HH; Fan M; Li X; Zhang W; Robarge J; Balch C; Davuluri RV; Kim S; Huang TH; Nephew KP Bioinformatics; 2006 Sep; 22(18):2210-6. PubMed ID: 16809387 [TBL] [Abstract][Full Text] [Related]
20. Sequence features of DNA binding sites reveal structural class of associated transcription factor. Narlikar L; Hartemink AJ Bioinformatics; 2006 Jan; 22(2):157-63. PubMed ID: 16267080 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]