BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

471 related articles for article (PubMed ID: 17397537)

  • 21. Hydration in discrete water (II): from neutral to charged solutes.
    Setny P
    J Phys Chem B; 2015 May; 119(19):5970-8. PubMed ID: 25896299
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Distinct role of hydration water in protein misfolding and aggregation revealed by fluctuating thermodynamics analysis.
    Chong SH; Ham S
    Acc Chem Res; 2015 Apr; 48(4):956-65. PubMed ID: 25844814
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Determination of atomic desolvation energies from the structures of crystallized proteins.
    Zhang C; Vasmatzis G; Cornette JL; DeLisi C
    J Mol Biol; 1997 Apr; 267(3):707-26. PubMed ID: 9126848
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Estimating protein-ligand binding free energy: atomic solvation parameters for partition coefficient and solvation free energy calculation.
    Pei J; Wang Q; Zhou J; Lai L
    Proteins; 2004 Dec; 57(4):651-64. PubMed ID: 15390269
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Modeling the hydration layer around proteins: HyPred.
    Virtanen JJ; Makowski L; Sosnick TR; Freed KF
    Biophys J; 2010 Sep; 99(5):1611-9. PubMed ID: 20816074
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Extended solvent-contact model for protein solvation: test cases for dipeptides.
    Choi H; Kang H; Park H
    J Mol Graph Model; 2013 May; 42():50-9. PubMed ID: 23548585
    [TBL] [Abstract][Full Text] [Related]  

  • 27. An extended aqueous solvation model based on atom-weighted solvent accessible surface areas: SAWSA v2.0 model.
    Hou T; Zhang W; Huang Q; Xu X
    J Mol Model; 2005 Feb; 11(1):26-40. PubMed ID: 15565273
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Discrimination of native protein structures using atom-atom contact scoring.
    McConkey BJ; Sobolev V; Edelman M
    Proc Natl Acad Sci U S A; 2003 Mar; 100(6):3215-20. PubMed ID: 12631702
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Computational protein design is a challenge for implicit solvation models.
    Jaramillo A; Wodak SJ
    Biophys J; 2005 Jan; 88(1):156-71. PubMed ID: 15377512
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Optimizing the affinity and specificity of ligand binding with the inclusion of solvation effect.
    Yan Z; Wang J
    Proteins; 2015 Sep; 83(9):1632-42. PubMed ID: 26111900
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Solvation and cavity occupation in biomolecules.
    Lynch GC; Perkyns JS; Nguyen BL; Pettitt BM
    Biochim Biophys Acta; 2015 May; 1850(5):923-931. PubMed ID: 25261777
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Polyproline II helix is the preferred conformation for unfolded polyalanine in water.
    Mezei M; Fleming PJ; Srinivasan R; Rose GD
    Proteins; 2004 May; 55(3):502-7. PubMed ID: 15103614
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
    Zhou R
    Proteins; 2003 Nov; 53(2):148-61. PubMed ID: 14517967
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Protein refolding in silico with atom-based statistical potentials and conformational search using a simple genetic algorithm.
    Fang Q; Shortle D
    J Mol Biol; 2006 Jun; 359(5):1456-67. PubMed ID: 16678202
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Native atomic burials, supplemented by physically motivated hydrogen bond constraints, contain sufficient information to determine the tertiary structure of small globular proteins.
    Pereira de Araújo AF; Gomes AL; Bursztyn AA; Shakhnovich EI
    Proteins; 2008 Feb; 70(3):971-83. PubMed ID: 17847091
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
    Vorobjev YN; Almagro JC; Hermans J
    Proteins; 1998 Sep; 32(4):399-413. PubMed ID: 9726412
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Rapid boundary element solvation electrostatics calculations in folding simulations: successful folding of a 23-residue peptide.
    Totrov M; Abagyan R
    Biopolymers; 2001; 60(2):124-33. PubMed ID: 11455546
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Grand Canonical Monte Carlo coupled multiscale simulation for electrochemical and solvent parameters of silver halide systems in water.
    Sudha V; Harinipriya S; Sangaranarayanan MV
    J Mol Graph Model; 2016 Jul; 68():140-146. PubMed ID: 27442589
    [TBL] [Abstract][Full Text] [Related]  

  • 39. The importance of hydration for the kinetics and thermodynamics of protein folding: simplified lattice models.
    Sorenson JM; Head-Gordon T
    Fold Des; 1998; 3(6):523-34. PubMed ID: 9889163
    [TBL] [Abstract][Full Text] [Related]  

  • 40. FACTS: Fast analytical continuum treatment of solvation.
    Haberthür U; Caflisch A
    J Comput Chem; 2008 Apr; 29(5):701-15. PubMed ID: 17918282
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 24.