These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

827 related articles for article (PubMed ID: 17406453)

  • 1. Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution.
    Wilkinson KA; Merino EJ; Weeks KM
    Nat Protoc; 2006; 1(3):1610-6. PubMed ID: 17406453
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE).
    Merino EJ; Wilkinson KA; Coughlan JL; Weeks KM
    J Am Chem Soc; 2005 Mar; 127(12):4223-31. PubMed ID: 15783204
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Time-resolved RNA SHAPE chemistry.
    Mortimer SA; Weeks KM
    J Am Chem Soc; 2008 Dec; 130(48):16178-80. PubMed ID: 18998638
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts.
    Wilkinson KA; Merino EJ; Weeks KM
    J Am Chem Soc; 2005 Apr; 127(13):4659-67. PubMed ID: 15796531
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Analysis of the RNA backbone: structural analysis of riboswitches by in-line probing and selective 2'-hydroxyl acylation and primer extension.
    Wakeman CA; Winkler WC
    Methods Mol Biol; 2009; 540():173-91. PubMed ID: 19381560
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA.
    Wilkinson KA; Vasa SM; Deigan KE; Mortimer SA; Giddings MC; Weeks KM
    RNA; 2009 Jul; 15(7):1314-21. PubMed ID: 19458034
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNA flexibility in the dimerization domain of a gamma retrovirus.
    Badorrek CS; Weeks KM
    Nat Chem Biol; 2005 Jul; 1(2):104-11. PubMed ID: 16408007
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RNA SHAPE chemistry with aromatic acylating reagents.
    Nodin L; Noël O; Chaminade F; Maskri O; Barbier V; David O; Fossé P; Xie J
    Bioorg Med Chem Lett; 2015 Feb; 25(3):566-70. PubMed ID: 25557357
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The mechanisms of RNA SHAPE chemistry.
    McGinnis JL; Dunkle JA; Cate JH; Weeks KM
    J Am Chem Soc; 2012 Apr; 134(15):6617-24. PubMed ID: 22475022
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mechanics of DNA flexibility visualized by selective 2'-amine acylation at nucleotide bulges.
    John DM; Merino EJ; Weeks KM
    J Mol Biol; 2004 Mar; 337(3):611-9. PubMed ID: 15019781
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Crystal structures, reactivity and inferred acylation transition states for 2'-amine substituted RNA.
    Gherghe CM; Krahn JM; Weeks KM
    J Am Chem Soc; 2005 Oct; 127(39):13622-8. PubMed ID: 16190727
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
    Lucks JB; Mortimer SA; Trapnell C; Luo S; Aviran S; Schroth GP; Pachter L; Doudna JA; Arkin AP
    Proc Natl Acad Sci U S A; 2011 Jul; 108(27):11063-8. PubMed ID: 21642531
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Exploring RNA structural codes with SHAPE chemistry.
    Weeks KM; Mauger DM
    Acc Chem Res; 2011 Dec; 44(12):1280-91. PubMed ID: 21615079
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA.
    Steen KA; Siegfried NA; Weeks KM
    Nat Protoc; 2011 Oct; 6(11):1683-94. PubMed ID: 21979276
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution.
    Mortimer SA; Weeks KM
    Nat Protoc; 2009; 4(10):1413-21. PubMed ID: 19745823
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Determination of RNA Structure with In Vitro SHAPE Experiments.
    Baes R; Charlier D; Peeters E
    Methods Mol Biol; 2022; 2516():259-290. PubMed ID: 35922631
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq).
    Watters KE; Lucks JB
    Methods Mol Biol; 2016; 1490():135-62. PubMed ID: 27665597
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).
    Watters KE; Yu AM; Strobel EJ; Settle AH; Lucks JB
    Methods; 2016 Jul; 103():34-48. PubMed ID: 27064082
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry.
    Wang B; Wilkinson KA; Weeks KM
    Biochemistry; 2008 Mar; 47(11):3454-61. PubMed ID: 18290632
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis.
    Smola MJ; Rice GM; Busan S; Siegfried NA; Weeks KM
    Nat Protoc; 2015 Nov; 10(11):1643-69. PubMed ID: 26426499
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 42.