BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

367 related articles for article (PubMed ID: 17407166)

  • 1. A model of restriction endonuclease MvaI in complex with DNA: a template for interpretation of experimental data and a guide for specificity engineering.
    Kosinski J; Kubareva E; Bujnicki JM
    Proteins; 2007 Jul; 68(1):324-36. PubMed ID: 17407166
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Inference of relationships in the 'twilight zone' of homology using a combination of bioinformatics and site-directed mutagenesis: a case study of restriction endonucleases Bsp6I and PvuII.
    Pawlak SD; Radlinska M; Chmiel AA; Bujnicki JM; Skowronek KJ
    Nucleic Acids Res; 2005; 33(2):661-71. PubMed ID: 15684412
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A theoretical model of restriction endonuclease NlaIV in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis and circular dichroism spectroscopy.
    Chmiel AA; Radlinska M; Pawlak SD; Krowarsch D; Bujnicki JM; Skowronek KJ
    Protein Eng Des Sel; 2005 Apr; 18(4):181-9. PubMed ID: 15849215
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Theoretical model of restriction endonuclease HpaI in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis.
    Skowronek KJ; Kosinski J; Bujnicki JM
    Proteins; 2006 Jun; 63(4):1059-68. PubMed ID: 16498623
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Identification of a new subfamily of HNH nucleases and experimental characterization of a representative member, HphI restriction endonuclease.
    Cymerman IA; Obarska A; Skowronek KJ; Lubys A; Bujnicki JM
    Proteins; 2006 Dec; 65(4):867-76. PubMed ID: 17029241
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Monomeric restriction endonuclease BcnI in the apo form and in an asymmetric complex with target DNA.
    Sokolowska M; Kaus-Drobek M; Czapinska H; Tamulaitis G; Szczepanowski RH; Urbanke C; Siksnys V; Bochtler M
    J Mol Biol; 2007 Jun; 369(3):722-34. PubMed ID: 17445830
    [TBL] [Abstract][Full Text] [Related]  

  • 7. I-Ssp6803I: the first homing endonuclease from the PD-(D/E)XK superfamily exhibits an unusual mode of DNA recognition.
    Orlowski J; Boniecki M; Bujnicki JM
    Bioinformatics; 2007 Mar; 23(5):527-30. PubMed ID: 17242028
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Generation of DNA cleavage specificities of type II restriction endonucleases by reassortment of target recognition domains.
    Jurenaite-Urbanaviciene S; Serksnaite J; Kriukiene E; Giedriene J; Venclovas C; Lubys A
    Proc Natl Acad Sci U S A; 2007 Jun; 104(25):10358-63. PubMed ID: 17553965
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A homology model of restriction endonuclease SfiI in complex with DNA.
    Chmiel AA; Bujnicki JM; Skowronek KJ
    BMC Struct Biol; 2005 Jan; 5():2. PubMed ID: 15667656
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Structural analysis of the heterodimeric type IIS restriction endonuclease R.BspD6I acting as a complex between a monomeric site-specific nickase and a catalytic subunit.
    Kachalova GS; Rogulin EA; Yunusova AK; Artyukh RI; Perevyazova TA; Matvienko NI; Zheleznaya LA; Bartunik HD
    J Mol Biol; 2008 Dec; 384(2):489-502. PubMed ID: 18835275
    [TBL] [Abstract][Full Text] [Related]  

  • 11. [Cleavage by restriction endonucleases MvaI and EcoRII of substrates modified in amino groups of heterocyclic bases].
    Kubareva EA; Gromova ES; Romanova EA; Oretskaia TS; Shabarova ZA
    Bioorg Khim; 1990 Apr; 16(4):501-6. PubMed ID: 2375778
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily.
    Ibryashkina EM; Zakharova MV; Baskunov VB; Bogdanova ES; Nagornykh MO; Den'mukhamedov MM; Melnik BS; Kolinski A; Gront D; Feder M; Solonin AS; Bujnicki JM
    BMC Struct Biol; 2007 Jul; 7():48. PubMed ID: 17626614
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Chimeras of the homing endonuclease PI-SceI and the homologous Candida tropicalis intein: a study to explore the possibility of exchanging DNA-binding modules to obtain highly specific endonucleases with altered specificity.
    Steuer S; Pingoud V; Pingoud A; Wende W
    Chembiochem; 2004 Feb; 5(2):206-13. PubMed ID: 14760742
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A model of structure and action of Sau3AI restriction endonuclease that comprises two MutH-like endonuclease domains within a single polypeptide.
    Bujnicki JM
    Acta Microbiol Pol; 2001; 50(3-4):219-31. PubMed ID: 11930990
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically.
    Kaus-Drobek M; Czapinska H; SokoĊ‚owska M; Tamulaitis G; Szczepanowski RH; Urbanke C; Siksnys V; Bochtler M
    Nucleic Acids Res; 2007; 35(6):2035-46. PubMed ID: 17344322
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site.
    Kaminska KH; Kawai M; Boniecki M; Kobayashi I; Bujnicki JM
    BMC Struct Biol; 2008 Nov; 8():48. PubMed ID: 19014591
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The restriction endonuclease R.NmeDI from Neisseria meningitidis that recognizes a palindromic sequence and cuts the DNA on both sides of the recognition sequence.
    Kwiatek A; Piekarowicz A
    Nucleic Acids Res; 2007; 35(19):6539-46. PubMed ID: 17897964
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles.
    Bujnicki JM; Rychlewski L
    J Mol Microbiol Biotechnol; 2001 Jan; 3(1):69-72. PubMed ID: 11200231
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Identification of base-specific contacts in protein-DNA complexes by photocrosslinking and mass spectrometry: a case study using the restriction endonuclease SsoII.
    Pingoud V; Geyer H; Geyer R; Kubareva E; Bujnicki JM; Pingoud A
    Mol Biosyst; 2005 Jul; 1(2):135-41. PubMed ID: 16880975
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Site-specific DNA-nicking mutants of the heterodimeric restriction endonuclease R.BbvCI.
    Heiter DF; Lunnen KD; Wilson GG
    J Mol Biol; 2005 May; 348(3):631-40. PubMed ID: 15826660
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 19.