These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

218 related articles for article (PubMed ID: 17444522)

  • 1. Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites.
    Kawabata T; Go N
    Proteins; 2007 Aug; 68(2):516-29. PubMed ID: 17444522
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Detection of multiscale pockets on protein surfaces using mathematical morphology.
    Kawabata T
    Proteins; 2010 Apr; 78(5):1195-211. PubMed ID: 19938154
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Comprehensive identification of "druggable" protein ligand binding sites.
    An J; Totrov M; Abagyan R
    Genome Inform; 2004; 15(2):31-41. PubMed ID: 15706489
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Pocket extraction on proteins via the Voronoi diagram of spheres.
    Kim D; Cho CH; Cho Y; Ryu J; Bhak J; Kim DS
    J Mol Graph Model; 2008 Apr; 26(7):1104-12. PubMed ID: 18023220
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A method for localizing ligand binding pockets in protein structures.
    Glaser F; Morris RJ; Najmanovich RJ; Laskowski RA; Thornton JM
    Proteins; 2006 Feb; 62(2):479-88. PubMed ID: 16304646
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification of protein functional surfaces by the concept of a split pocket.
    Tseng YY; Li WH
    Proteins; 2009 Sep; 76(4):959-76. PubMed ID: 19326458
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ProMate: a structure based prediction program to identify the location of protein-protein binding sites.
    Neuvirth H; Raz R; Schreiber G
    J Mol Biol; 2004 Apr; 338(1):181-99. PubMed ID: 15050833
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Evaluation of the searching abilities of HBOP and HBSITE for binding pocket detection.
    Oda A; Yamaotsu N; Hirono S
    J Comput Chem; 2009 Dec; 30(16):2728-37. PubMed ID: 19399761
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Form follows function: shape analysis of protein cavities for receptor-based drug design.
    Weisel M; Proschak E; Kriegl JM; Schneider G
    Proteomics; 2009 Jan; 9(2):451-9. PubMed ID: 19142949
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Binding response: a descriptor for selecting ligand binding site on protein surfaces.
    Zhong S; MacKerell AD
    J Chem Inf Model; 2007; 47(6):2303-15. PubMed ID: 17900106
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
    Najmanovich R; Kurbatova N; Thornton J
    Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Shape variation in protein binding pockets and their ligands.
    Kahraman A; Morris RJ; Laskowski RA; Thornton JM
    J Mol Biol; 2007 Apr; 368(1):283-301. PubMed ID: 17337005
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Large-scale comparison of four binding site detection algorithms.
    Schmidtke P; Souaille C; Estienne F; Baurin N; Kroemer RT
    J Chem Inf Model; 2010 Dec; 50(12):2191-200. PubMed ID: 20828173
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Large scale analysis of protein-binding cavities using self-organizing maps and wavelet-based surface patches to describe functional properties, selectivity discrimination, and putative cross-reactivity.
    Kupas K; Ultsch A; Klebe G
    Proteins; 2008 May; 71(3):1288-306. PubMed ID: 18041748
    [TBL] [Abstract][Full Text] [Related]  

  • 15. BSAlign: a rapid graph-based algorithm for detecting ligand-binding sites in protein structures.
    Aung Z; Tong JC
    Genome Inform; 2008; 21():65-76. PubMed ID: 19425148
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Characterization of local geometry of protein surfaces with the visibility criterion.
    Li B; Turuvekere S; Agrawal M; La D; Ramani K; Kihara D
    Proteins; 2008 May; 71(2):670-83. PubMed ID: 17975834
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Computational approaches to identifying and characterizing protein binding sites for ligand design.
    Henrich S; Salo-Ahen OM; Huang B; Rippmann FF; Cruciani G; Wade RC
    J Mol Recognit; 2010; 23(2):209-19. PubMed ID: 19746440
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Merging chemical and biological space: Structural mapping of enzyme binding pocket space.
    Weskamp N; Hüllermeier E; Klebe G
    Proteins; 2009 Aug; 76(2):317-30. PubMed ID: 19173307
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PocketDepth: a new depth based algorithm for identification of ligand binding sites in proteins.
    Kalidas Y; Chandra N
    J Struct Biol; 2008 Jan; 161(1):31-42. PubMed ID: 17949996
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular surface generation using a variable-radius solvent probe.
    Bhat S; Purisima EO
    Proteins; 2006 Jan; 62(1):244-61. PubMed ID: 16287115
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.