242 related articles for article (PubMed ID: 17461667)
1. Variable-free exploration of stochastic models: a gene regulatory network example.
Erban R; Frewen TA; Wang X; Elston TC; Coifman R; Nadler B; Kevrekidis IG
J Chem Phys; 2007 Apr; 126(15):155103. PubMed ID: 17461667
[TBL] [Abstract][Full Text] [Related]
2. Gene regulatory networks: a coarse-grained, equation-free approach to multiscale computation.
Erban R; Kevrekidis IG; Adalsteinsson D; Elston TC
J Chem Phys; 2006 Feb; 124(8):084106. PubMed ID: 16512707
[TBL] [Abstract][Full Text] [Related]
3. Spatially distributed stochastic systems: Equation-free and equation-assisted preconditioned computations.
Qiao L; Erban R; Kelley CT; Kevrekidis IG
J Chem Phys; 2006 Nov; 125(20):204108. PubMed ID: 17144691
[TBL] [Abstract][Full Text] [Related]
4. On the attenuation and amplification of molecular noise in genetic regulatory networks.
Chen BS; Wang YC
BMC Bioinformatics; 2006 Feb; 7():52. PubMed ID: 16457708
[TBL] [Abstract][Full Text] [Related]
5. Modelling metapopulations with stochastic membrane systems.
Besozzi D; Cazzaniga P; Pescini D; Mauri G
Biosystems; 2008 Mar; 91(3):499-514. PubMed ID: 17904729
[TBL] [Abstract][Full Text] [Related]
6. Stochastic P systems and the simulation of biochemical processes with dynamic compartments.
Spicher A; Michel O; Cieslak M; Giavitto JL; Prusinkiewicz P
Biosystems; 2008 Mar; 91(3):458-72. PubMed ID: 17728055
[TBL] [Abstract][Full Text] [Related]
7. Benchmarking of dynamic Bayesian networks inferred from stochastic time-series data.
David LA; Wiggins CH
Ann N Y Acad Sci; 2007 Dec; 1115():90-101. PubMed ID: 17925346
[TBL] [Abstract][Full Text] [Related]
8. Estimating parameters and hidden variables in non-linear state-space models based on ODEs for biological networks inference.
Quach M; Brunel N; d'Alché-Buc F
Bioinformatics; 2007 Dec; 23(23):3209-16. PubMed ID: 18042557
[TBL] [Abstract][Full Text] [Related]
9. Transient analysis of stochastic switches and trajectories with applications to gene regulatory networks.
Munsky B; Khammash M
IET Syst Biol; 2008 Sep; 2(5):323-33. PubMed ID: 19045827
[TBL] [Abstract][Full Text] [Related]
10. Coarse-grained computations for a micellar system.
Kopelevich DI; Panagiotopoulos AZ; Kevrekidis IG
J Chem Phys; 2005 Jan; 122(4):44907. PubMed ID: 15740298
[TBL] [Abstract][Full Text] [Related]
11. Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method.
Fujita A; Sato JR; Garay-Malpartida HM; Morettin PA; Sogayar MC; Ferreira CE
Bioinformatics; 2007 Jul; 23(13):1623-30. PubMed ID: 17463021
[TBL] [Abstract][Full Text] [Related]
12. Steady-state expression of self-regulated genes.
Fournier T; Gabriel JP; Mazza C; Pasquier J; Galbete JL; Mermod N
Bioinformatics; 2007 Dec; 23(23):3185-92. PubMed ID: 17933850
[TBL] [Abstract][Full Text] [Related]
13. Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data.
Soranzo N; Bianconi G; Altafini C
Bioinformatics; 2007 Jul; 23(13):1640-7. PubMed ID: 17485431
[TBL] [Abstract][Full Text] [Related]
14. Design and implementation of a tool for translating SBML into the biochemical stochastic pi-calculus.
Eccher C; Priami C
Bioinformatics; 2006 Dec; 22(24):3075-81. PubMed ID: 17046974
[TBL] [Abstract][Full Text] [Related]
15. In silico simulation of biological network dynamics.
Salwinski L; Eisenberg D
Nat Biotechnol; 2004 Aug; 22(8):1017-9. PubMed ID: 15235611
[TBL] [Abstract][Full Text] [Related]
16. Robust H infinity-stabilization design in gene networks under stochastic molecular noises: fuzzy-interpolation approach.
Chen BS; Chang YT; Wang YC
IEEE Trans Syst Man Cybern B Cybern; 2008 Feb; 38(1):25-42. PubMed ID: 18270080
[TBL] [Abstract][Full Text] [Related]
17. On robust stability of stochastic genetic regulatory networks with time delays: a delay fractioning approach.
Wang Y; Wang Z; Liang J
IEEE Trans Syst Man Cybern B Cybern; 2010 Jun; 40(3):729-40. PubMed ID: 19884095
[TBL] [Abstract][Full Text] [Related]
18. On delayed genetic regulatory networks with polytopic uncertainties: robust stability analysis.
Wang Z; Gao H; Cao J; Liu X
IEEE Trans Nanobioscience; 2008 Jun; 7(2):154-63. PubMed ID: 18556263
[TBL] [Abstract][Full Text] [Related]
19. Learning regulatory programs that accurately predict differential expression with MEDUSA.
Kundaje A; Lianoglou S; Li X; Quigley D; Arias M; Wiggins CH; Zhang L; Leslie C
Ann N Y Acad Sci; 2007 Dec; 1115():178-202. PubMed ID: 17934055
[TBL] [Abstract][Full Text] [Related]
20. Fitting a geometric graph to a protein-protein interaction network.
Higham DJ; Rasajski M; Przulj N
Bioinformatics; 2008 Apr; 24(8):1093-9. PubMed ID: 18344248
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]