174 related articles for article (PubMed ID: 17471460)
1. Dead-end elimination for multistate protein design.
Yanover C; Fromer M; Shifman JM
J Comput Chem; 2007 Oct; 28(13):2122-9. PubMed ID: 17471460
[TBL] [Abstract][Full Text] [Related]
2. Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.
Georgiev I; Lilien RH; Donald BR
Bioinformatics; 2006 Jul; 22(14):e174-83. PubMed ID: 16873469
[TBL] [Abstract][Full Text] [Related]
3. Preprocessing of rotamers for protein design calculations.
Shah PS; Hom GK; Mayo SL
J Comput Chem; 2004 Nov; 25(14):1797-800. PubMed ID: 15362137
[TBL] [Abstract][Full Text] [Related]
4. Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design.
Voigt CA; Gordon DB; Mayo SL
J Mol Biol; 2000 Jun; 299(3):789-803. PubMed ID: 10835284
[TBL] [Abstract][Full Text] [Related]
5. Dead-end elimination with backbone flexibility.
Georgiev I; Donald BR
Bioinformatics; 2007 Jul; 23(13):i185-94. PubMed ID: 17646295
[TBL] [Abstract][Full Text] [Related]
6. Protein design for diversity of sequences and conformations using dead-end elimination.
Hanf KJ
Methods Mol Biol; 2012; 899():127-44. PubMed ID: 22735950
[TBL] [Abstract][Full Text] [Related]
7. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
Fromer M; Yanover C
Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
[TBL] [Abstract][Full Text] [Related]
8. An efficient algorithm for multistate protein design based on FASTER.
Allen BD; Mayo SL
J Comput Chem; 2010 Apr; 31(5):904-16. PubMed ID: 19637210
[TBL] [Abstract][Full Text] [Related]
9. Computational protein design with side-chain conformational entropy.
Sciretti D; Bruscolini P; Pelizzola A; Pretti M; Jaramillo A
Proteins; 2009 Jan; 74(1):176-91. PubMed ID: 18618711
[TBL] [Abstract][Full Text] [Related]
10. An extended dead-end elimination algorithm to determine gap-free lists of low energy states.
Kloppmann E; Ullmann GM; Becker T
J Comput Chem; 2007 Nov; 28(14):2325-35. PubMed ID: 17471458
[TBL] [Abstract][Full Text] [Related]
11. MUMBO: a protein-design approach to crystallographic model building and refinement.
Stiebritz MT; Muller YA
Acta Crystallogr D Biol Crystallogr; 2006 Jun; 62(Pt 6):648-58. PubMed ID: 16699192
[TBL] [Abstract][Full Text] [Related]
12. PLUG (Pruning of Local Unrealistic Geometries) removes restrictions on biophysical modeling for protein design.
Hallen MA
Proteins; 2019 Jan; 87(1):62-73. PubMed ID: 30378699
[TBL] [Abstract][Full Text] [Related]
13. Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization.
Desmet J; Spriet J; Lasters I
Proteins; 2002 Jul; 48(1):31-43. PubMed ID: 12012335
[TBL] [Abstract][Full Text] [Related]
14. Dramatic performance enhancements for the FASTER optimization algorithm.
Allen BD; Mayo SL
J Comput Chem; 2006 Jul; 27(10):1071-5. PubMed ID: 16685715
[TBL] [Abstract][Full Text] [Related]
15. Restricted dead-end elimination: protein redesign with a bounded number of residue mutations.
Safi M; Lilien RH
J Comput Chem; 2010 Apr; 31(6):1207-15. PubMed ID: 19885869
[TBL] [Abstract][Full Text] [Related]
16. Theoretical and algorithmical optimization of the dead-end elimination theorem.
Desmet J; De Maeyer M; Lasters I
Pac Symp Biocomput; 1997; ():122-33. PubMed ID: 9390285
[TBL] [Abstract][Full Text] [Related]
17. Pareto optimization in computational protein design with multiple objectives.
Suárez M; Tortosa P; Carrera J; Jaramillo A
J Comput Chem; 2008 Dec; 29(16):2704-11. PubMed ID: 18496793
[TBL] [Abstract][Full Text] [Related]
18. Computational design of a single amino acid sequence that can switch between two distinct protein folds.
Ambroggio XI; Kuhlman B
J Am Chem Soc; 2006 Feb; 128(4):1154-61. PubMed ID: 16433531
[TBL] [Abstract][Full Text] [Related]
19. Prediction of protein-protein interface sequence diversity using flexible backbone computational protein design.
Humphris EL; Kortemme T
Structure; 2008 Dec; 16(12):1777-88. PubMed ID: 19081054
[TBL] [Abstract][Full Text] [Related]
20. The dead-end elimination theorem: mathematical aspects, implementation, optimizations, evaluation, and performance.
De Maeyer M; Desmet J; Lasters I
Methods Mol Biol; 2000; 143():265-304. PubMed ID: 11084910
[No Abstract] [Full Text] [Related]
[Next] [New Search]