193 related articles for article (PubMed ID: 17471473)
1. H4 histone tail mediated DNA-DNA interaction and effects on DNA structure, flexibility, and counterion binding: a molecular dynamics study.
Korolev N; Nordenskiöld L
Biopolymers; 2007 Aug 5-15; 86(5-6):409-23. PubMed ID: 17471473
[TBL] [Abstract][Full Text] [Related]
2. Molecular dynamics simulations demonstrate the regulation of DNA-DNA attraction by H4 histone tail acetylations and mutations.
Korolev N; Yu H; Lyubartsev AP; Nordenskiöld L
Biopolymers; 2014 Oct; 101(10):1051-64. PubMed ID: 24740714
[TBL] [Abstract][Full Text] [Related]
3. Modeling H3 histone N-terminal tail and linker DNA interactions.
La Penna G; Furlan S; Perico A
Biopolymers; 2006 Oct; 83(2):135-47. PubMed ID: 16691563
[TBL] [Abstract][Full Text] [Related]
4. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Davey CA; Sargent DF; Luger K; Maeder AW; Richmond TJ
J Mol Biol; 2002 Jun; 319(5):1097-113. PubMed ID: 12079350
[TBL] [Abstract][Full Text] [Related]
5. DNA structure: what's in charge?
McConnell KJ; Beveridge DL
J Mol Biol; 2000 Dec; 304(5):803-20. PubMed ID: 11124028
[TBL] [Abstract][Full Text] [Related]
6. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.
McConnell KJ; Beveridge DL
J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529
[TBL] [Abstract][Full Text] [Related]
7. Computer modeling demonstrates that electrostatic attraction of nucleosomal DNA is mediated by histone tails.
Korolev N; Lyubartsev AP; Nordenskiöld L
Biophys J; 2006 Jun; 90(12):4305-16. PubMed ID: 16565063
[TBL] [Abstract][Full Text] [Related]
8. Structural flexibility of the nucleosome core particle at atomic resolution studied by molecular dynamics simulation.
Roccatano D; Barthel A; Zacharias M
Biopolymers; 2007 Apr 5-15; 85(5-6):407-21. PubMed ID: 17252562
[TBL] [Abstract][Full Text] [Related]
9. Structure and dynamics of nucleosomal DNA.
Muthurajan UM; Park YJ; Edayathumangalam RS; Suto RK; Chakravarthy S; Dyer PN; Luger K
Biopolymers; 2003 Apr; 68(4):547-56. PubMed ID: 12666179
[TBL] [Abstract][Full Text] [Related]
10. Structure and binding of the H4 histone tail and the effects of lysine 16 acetylation.
Yang D; Arya G
Phys Chem Chem Phys; 2011 Feb; 13(7):2911-21. PubMed ID: 21157623
[TBL] [Abstract][Full Text] [Related]
11. Molecular dynamics simulation study of oriented polyamine- and Na-DNA: sequence specific interactions and effects on DNA structure.
Korolev N; Lyubartsev AP; Laaksonen A; Nordenskiöld L
Biopolymers; 2004 Apr; 73(5):542-55. PubMed ID: 15048778
[TBL] [Abstract][Full Text] [Related]
12. Water-mediated contacts in the trp-repressor operator complex recognition process.
Wibowo FR; Rauch C; Trieb M; Wellenzohn B; Liedl KR
Biopolymers; 2004 Apr; 73(6):668-81. PubMed ID: 15048770
[TBL] [Abstract][Full Text] [Related]
13. Significant compaction of H4 histone tail upon charge neutralization by acetylation and its mimics, possible effects on chromatin structure.
Shabane PS; Onufriev AV
J Mol Biol; 2021 Mar; 433(6):166683. PubMed ID: 33096105
[TBL] [Abstract][Full Text] [Related]
14. Molecular dynamics simulation of 8-oxoguanine containing DNA fragments reveals altered hydration and ion binding patterns.
Naômé A; Schyman P; Laaksonen A; Vercauteren DP
J Phys Chem B; 2010 Apr; 114(14):4789-801. PubMed ID: 20307074
[TBL] [Abstract][Full Text] [Related]
15. Structure-function relationship of inhibitory Smads: Structural flexibility contributes to functional divergence.
Hariharan R; Pillai MR
Proteins; 2008 Jun; 71(4):1853-62. PubMed ID: 18175316
[TBL] [Abstract][Full Text] [Related]
16. Influence of netropsin's charges on the minor groove width of d(CGCGAATTCGCG)2.
Wellenzohn B; Flader W; Winger RH; Hallbrucker A; Mayer E; Liedl KR
Biopolymers; 2001-2002; 61(4):276-86. PubMed ID: 12115142
[TBL] [Abstract][Full Text] [Related]
17. Incorporating receptor flexibility in the molecular design of protein interfaces.
Li L; Liang S; Pilcher MM; Meroueh SO
Protein Eng Des Sel; 2009 Sep; 22(9):575-86. PubMed ID: 19643976
[TBL] [Abstract][Full Text] [Related]
18. Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics.
Potoyan DA; Papoian GA
J Am Chem Soc; 2011 May; 133(19):7405-15. PubMed ID: 21517079
[TBL] [Abstract][Full Text] [Related]
19. Relaxation dynamics of nucleosomal DNA.
Ponomarev SY; Putkaradze V; Bishop TC
Phys Chem Chem Phys; 2009 Dec; 11(45):10633-43. PubMed ID: 20145808
[TBL] [Abstract][Full Text] [Related]
20. Cation-induced polyelectrolyte-polyelectrolyte attraction in solutions of DNA and nucleosome core particles.
Korolev N; Lyubartsev AP; Nordenskiöld L
Adv Colloid Interface Sci; 2010 Jul; 158(1-2):32-47. PubMed ID: 19758583
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]