74 related articles for article (PubMed ID: 17476042)
1. Tandem mass spectrometry protein identification on a PC grid.
Zosso D; Podvinec M; Müller M; Aebersold R; Peitsch MC; Schwede T
Stud Health Technol Inform; 2007; 126():3-12. PubMed ID: 17476042
[TBL] [Abstract][Full Text] [Related]
2. Grid-based analysis of tandem mass spectrometry data in clinical proteomics.
Quandt A; Hernandez P; Kunzst P; Pautasso C; Tuloup M; Hernandez C; Appel RD
Stud Health Technol Inform; 2007; 126():13-22. PubMed ID: 17476043
[TBL] [Abstract][Full Text] [Related]
3. SwissPIT: An workflow-based platform for analyzing tandem-MS spectra using the Grid.
Quandt A; Masselot A; Hernandez P; Hernandez C; Maffioletti S; Appel RD; Lisacek F
Proteomics; 2009 May; 9(10):2648-55. PubMed ID: 19391179
[TBL] [Abstract][Full Text] [Related]
4. An easy-to-use Decoy Database Builder software tool, implementing different decoy strategies for false discovery rate calculation in automated MS/MS protein identifications.
Reidegeld KA; Eisenacher M; Kohl M; Chamrad D; Körting G; Blüggel M; Meyer HE; Stephan C
Proteomics; 2008 Mar; 8(6):1129-37. PubMed ID: 18338823
[TBL] [Abstract][Full Text] [Related]
5. Semi-supervised learning for peptide identification from shotgun proteomics datasets.
Käll L; Canterbury JD; Weston J; Noble WS; MacCoss MJ
Nat Methods; 2007 Nov; 4(11):923-5. PubMed ID: 17952086
[TBL] [Abstract][Full Text] [Related]
6. PepSOM: an algorithm for peptide identification by tandem mass spectrometry based on SOM.
Ning K; Ng HK; Leong HW
Genome Inform; 2006; 17(2):194-205. PubMed ID: 17503392
[TBL] [Abstract][Full Text] [Related]
7. Implementation and application of a versatile clustering tool for tandem mass spectrometry data.
Flikka K; Meukens J; Helsens K; Vandekerckhove J; Eidhammer I; Gevaert K; Martens L
Proteomics; 2007 Sep; 7(18):3245-58. PubMed ID: 17708593
[TBL] [Abstract][Full Text] [Related]
8. Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data.
Vogel C; Marcotte EM
Nat Protoc; 2008; 3(9):1444-51. PubMed ID: 18772871
[TBL] [Abstract][Full Text] [Related]
9. XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.
Muth T; Vaudel M; Barsnes H; Martens L; Sickmann A
Proteomics; 2010 Apr; 10(7):1522-4. PubMed ID: 20140905
[TBL] [Abstract][Full Text] [Related]
10. Improving peptide identification using an empirical peptide retention time database.
Sun W; Zhang L; Yang R; Shao C; Zhang Z; Gao Y
Rapid Commun Mass Spectrom; 2009 Jan; 23(1):109-18. PubMed ID: 19065623
[TBL] [Abstract][Full Text] [Related]
11. An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry.
Ning K; Ng HK; Leong HW
Genome Inform; 2007; 19():119-30. PubMed ID: 18546510
[TBL] [Abstract][Full Text] [Related]
12. Oscore: a combined score to reduce false negative rates for peptide identification in tandem mass spectrometry analysis.
Shao C; Sun W; Li F; Yang R; Zhang L; Gao Y
J Mass Spectrom; 2009 Jan; 44(1):25-31. PubMed ID: 18698557
[TBL] [Abstract][Full Text] [Related]
13. IntelliMS: a platform to efficiently manage and visualize tandem mass spectral data.
Kwon MS; Lee HJ; Jeong SK; Lee EY; Cho SY; Paik YK
Proteomics; 2008 Dec; 8(23-24):4910-3. PubMed ID: 19003859
[TBL] [Abstract][Full Text] [Related]
14. Central limit theorem as an approximation for intensity-based scoring function.
Sadygov R; Wohlschlegel J; Park SK; Xu T; Yates JR
Anal Chem; 2006 Jan; 78(1):89-95. PubMed ID: 16383314
[TBL] [Abstract][Full Text] [Related]
15. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
Mueller LN; Brusniak MY; Mani DR; Aebersold R
J Proteome Res; 2008 Jan; 7(1):51-61. PubMed ID: 18173218
[TBL] [Abstract][Full Text] [Related]
16. Comprehensive phosphorylation site analysis of individual phosphoproteins applying scoring schemes for MS/MS data.
Schlosser A; Vanselow JT; Kramer A
Anal Chem; 2007 Oct; 79(19):7439-49. PubMed ID: 17718535
[TBL] [Abstract][Full Text] [Related]
17. Large-scale unrestricted identification of post-translation modifications using tandem mass spectrometry.
Havilio M; Wool A
Anal Chem; 2007 Feb; 79(4):1362-8. PubMed ID: 17297935
[TBL] [Abstract][Full Text] [Related]
18. Algorithms and tools for analysis and management of mass spectrometry data.
Veltri P
Brief Bioinform; 2008 Mar; 9(2):144-55. PubMed ID: 18356204
[TBL] [Abstract][Full Text] [Related]
19. Accurate-mass databases for comprehensive screening of pesticide residues in food by fast liquid chromatography time-of-flight mass spectrometry.
Mezcua M; Malato O; García-Reyes JF; Molina-Díaz A; Fernández-Alba AR
Anal Chem; 2009 Feb; 81(3):913-29. PubMed ID: 19117389
[TBL] [Abstract][Full Text] [Related]
20. Generation and analysis of multidimensional protein identification technology datasets.
Swanson SK; Florens L; Washburn MP
Methods Mol Biol; 2009; 492():1-20. PubMed ID: 19241024
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
