These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

6958 related articles for article (PubMed ID: 17483113)

  • 1. PAML 4: phylogenetic analysis by maximum likelihood.
    Yang Z
    Mol Biol Evol; 2007 Aug; 24(8):1586-91. PubMed ID: 17483113
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PAMLX: a graphical user interface for PAML.
    Xu B; Yang Z
    Mol Biol Evol; 2013 Dec; 30(12):2723-4. PubMed ID: 24105918
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Beginner's Guide on the Use of PAML to Detect Positive Selection.
    Álvarez-Carretero S; Kapli P; Yang Z
    Mol Biol Evol; 2023 Apr; 40(4):. PubMed ID: 37096789
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.
    Schmidt HA; Strimmer K; Vingron M; von Haeseler A
    Bioinformatics; 2002 Mar; 18(3):502-4. PubMed ID: 11934758
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene Loci and calibration points, with application to a radiation of cute-looking mouse lemur species.
    Yang Z; Yoder AD
    Syst Biol; 2003 Oct; 52(5):705-16. PubMed ID: 14530137
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reconstruction of ancestral protein sequences and its applications.
    Cai W; Pei J; Grishin NV
    BMC Evol Biol; 2004 Sep; 4():33. PubMed ID: 15377393
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Detecting the signatures of adaptive evolution in protein-coding genes.
    Bielawski JP
    Curr Protoc Mol Biol; 2013 Jan; Chapter 19():Unit 19.1.. PubMed ID: 23288462
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent.
    Flouri T; Jiao X; Rannala B; Yang Z
    Mol Biol Evol; 2018 Oct; 35(10):2585-2593. PubMed ID: 30053098
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Human PAML browser: a database of positive selection on human genes using phylogenetic methods.
    Nickel GC; Tefft D; Adams MD
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D800-8. PubMed ID: 17962310
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Unraveling the evolutionary radiation of the thoracican barnacles using molecular and morphological evidence: a comparison of several divergence time estimation approaches.
    Pérez-Losada M; Høeg JT; Crandall KA
    Syst Biol; 2004 Apr; 53(2):244-64. PubMed ID: 15205051
    [TBL] [Abstract][Full Text] [Related]  

  • 11. jModelTest: phylogenetic model averaging.
    Posada D
    Mol Biol Evol; 2008 Jul; 25(7):1253-6. PubMed ID: 18397919
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Vestige: maximum likelihood phylogenetic footprinting.
    Wakefield MJ; Maxwell P; Huttley GA
    BMC Bioinformatics; 2005 May; 6():130. PubMed ID: 15921531
    [TBL] [Abstract][Full Text] [Related]  

  • 14. paPAML: An Improved Computational Tool to Explore Selection Pressure on Protein-Coding Sequences.
    Steffen R; Ogoniak L; Grundmann N; Pawluchin A; Soehnlein O; Schmitz J
    Genes (Basel); 2022 Jun; 13(6):. PubMed ID: 35741852
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.
    McCormack JE; Huang H; Knowles LL
    Syst Biol; 2009 Oct; 58(5):501-8. PubMed ID: 20525604
    [TBL] [Abstract][Full Text] [Related]  

  • 16. STEM: species tree estimation using maximum likelihood for gene trees under coalescence.
    Kubatko LS; Carstens BC; Knowles LL
    Bioinformatics; 2009 Apr; 25(7):971-3. PubMed ID: 19211573
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Inference of Episodic Changes in Natural Selection Acting on Protein Coding Sequences via CODEML.
    Bielawski JP; Baker JL; Mingrone J
    Curr Protoc Bioinformatics; 2016 Jun; 54():6.15.1-6.15.32. PubMed ID: 27322407
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PoSE: visualization of patterns of sequence evolution using PAML and MATLAB.
    Zhao K; Henderson E; Bullard K; Oberste MS; Burns CC; Jorba J
    BMC Bioinformatics; 2018 Oct; 19(Suppl 11):364. PubMed ID: 30343671
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A practical algorithm for estimation of the maximum likelihood ancestral reconstruction error.
    Hickey G; Blanchette M
    Pac Symp Biocomput; 2010; ():31-42. PubMed ID: 19908355
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ADAPTSITE: detecting natural selection at single amino acid sites.
    Suzuki Y; Gojobori T; Nei M
    Bioinformatics; 2001 Jul; 17(7):660-1. PubMed ID: 11448887
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 348.