These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 17519025)

  • 1. Hinge Atlas: relating protein sequence to sites of structural flexibility.
    Flores SC; Lu LJ; Yang J; Carriero N; Gerstein MB
    BMC Bioinformatics; 2007 May; 8():167. PubMed ID: 17519025
    [TBL] [Abstract][Full Text] [Related]  

  • 2. FlexOracle: predicting flexible hinges by identification of stable domains.
    Flores SC; Gerstein MB
    BMC Bioinformatics; 2007 Jun; 8():215. PubMed ID: 17587456
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Relating destabilizing regions to known functional sites in proteins.
    Dessailly BH; Lensink MF; Wodak SJ
    BMC Bioinformatics; 2007 Apr; 8():141. PubMed ID: 17470296
    [TBL] [Abstract][Full Text] [Related]  

  • 4. StoneHinge: hinge prediction by network analysis of individual protein structures.
    Keating KS; Flores SC; Gerstein MB; Kuhn LA
    Protein Sci; 2009 Feb; 18(2):359-71. PubMed ID: 19180449
    [TBL] [Abstract][Full Text] [Related]  

  • 5. HingeMaster: normal mode hinge prediction approach and integration of complementary predictors.
    Flores SC; Keating KS; Painter J; Morcos F; Nguyen K; Merritt EA; Kuhn LA; Gerstein MB
    Proteins; 2008 Nov; 73(2):299-319. PubMed ID: 18433058
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Sequence based residue depth prediction using evolutionary information and predicted secondary structure.
    Zhang H; Zhang T; Chen K; Shen S; Ruan J; Kurgan L
    BMC Bioinformatics; 2008 Sep; 9():388. PubMed ID: 18803867
    [TBL] [Abstract][Full Text] [Related]  

  • 7. NAHAL-Flex: A Numerical and Alphabetical Hinge Detection Algorithm for Flexible Protein Structure Alignment.
    Fotoohifiroozabadi S; Mohamad MS; Deris S
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):934-943. PubMed ID: 28534783
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Adding some SPICE to DAS.
    Prlić A; Down TA; Hubbard TJ
    Bioinformatics; 2005 Sep; 21 Suppl 2(Suppl 2):ii40-1. PubMed ID: 16204122
    [TBL] [Abstract][Full Text] [Related]  

  • 9. On distance and similarity in fold space.
    Sippl MJ
    Bioinformatics; 2008 Mar; 24(6):872-3. PubMed ID: 18227113
    [TBL] [Abstract][Full Text] [Related]  

  • 10. QSCOP--SCOP quantified by structural relationships.
    Suhrer SJ; Wiederstein M; Sippl MJ
    Bioinformatics; 2007 Feb; 23(4):513-4. PubMed ID: 17127679
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Three-dimensional shape-structure comparison method for protein classification.
    Daras P; Zarpalas D; Axenopoulos A; Tzovaras D; Strintzis MG
    IEEE/ACM Trans Comput Biol Bioinform; 2006; 3(3):193-207. PubMed ID: 17048458
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
    Najmanovich R; Kurbatova N; Thornton J
    Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Characterizing and Predicting Protein Hinges for Mechanistic Insight.
    Khade PM; Kumar A; Jernigan RL
    J Mol Biol; 2020 Jan; 432(2):508-522. PubMed ID: 31786268
    [TBL] [Abstract][Full Text] [Related]  

  • 14. hdANM: a new comprehensive dynamics model for protein hinges.
    Khade PM; Scaramozzino D; Kumar A; Lacidogna G; Carpinteri A; Jernigan RL
    Biophys J; 2021 Nov; 120(22):4955-4965. PubMed ID: 34687719
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A comprehensive and non-redundant database of protein domain movements.
    Qi G; Lee R; Hayward S
    Bioinformatics; 2005 Jun; 21(12):2832-8. PubMed ID: 15802286
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Investigation of sequence features of hinge-bending regions in proteins with domain movements using kernel logistic regression.
    Veevers R; Cawley G; Hayward S
    BMC Bioinformatics; 2020 Apr; 21(1):137. PubMed ID: 32272894
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Building blocks, hinge-bending motions and protein topology.
    Sinha N; Tsa CJ; Nussinov R
    J Biomol Struct Dyn; 2001 Dec; 19(3):369-80. PubMed ID: 11790137
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The DynDom database of protein domain motions.
    Lee RA; Razaz M; Hayward S
    Bioinformatics; 2003 Jul; 19(10):1290-1. PubMed ID: 12835274
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Domain-based small molecule binding site annotation.
    Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
    BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SQUARE--determining reliable regions in sequence alignments.
    Tress ML; Graña O; Valencia A
    Bioinformatics; 2004 Apr; 20(6):974-5. PubMed ID: 14764569
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.