676 related articles for article (PubMed ID: 17533220)
1. Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells.
Bouyssié D; Gonzalez de Peredo A; Mouton E; Albigot R; Roussel L; Ortega N; Cayrol C; Burlet-Schiltz O; Girard JP; Monsarrat B
Mol Cell Proteomics; 2007 Sep; 6(9):1621-37. PubMed ID: 17533220
[TBL] [Abstract][Full Text] [Related]
2. MaXIC-Q Web: a fully automated web service using statistical and computational methods for protein quantitation based on stable isotope labeling and LC-MS.
Tsou CC; Tsui YH; Yian YH; Chen YJ; Yang HY; Yu CY; Lynn KS; Chen YJ; Sung TY; Hsu WL
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W661-9. PubMed ID: 19528069
[TBL] [Abstract][Full Text] [Related]
3. The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments.
Cannataro M; Cuda G; Gaspari M; Greco S; Tradigo G; Veltri P
BMC Bioinformatics; 2007 Jul; 8():255. PubMed ID: 17631686
[TBL] [Abstract][Full Text] [Related]
4. A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics.
Cox J; Matic I; Hilger M; Nagaraj N; Selbach M; Olsen JV; Mann M
Nat Protoc; 2009; 4(5):698-705. PubMed ID: 19373234
[TBL] [Abstract][Full Text] [Related]
5. Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective.
Perez-Riverol Y; Wang R; Hermjakob H; Müller M; Vesada V; Vizcaíno JA
Biochim Biophys Acta; 2014 Jan; 1844(1 Pt A):63-76. PubMed ID: 23467006
[TBL] [Abstract][Full Text] [Related]
6. Rapid validation of Mascot search results via stable isotope labeling, pair picking, and deconvolution of fragmentation patterns.
Volchenboum SL; Kristjansdottir K; Wolfgeher D; Kron SJ
Mol Cell Proteomics; 2009 Aug; 8(8):2011-22. PubMed ID: 19435713
[TBL] [Abstract][Full Text] [Related]
7. ProteinQuant Suite: a bundle of automated software tools for label-free quantitative proteomics.
Mann B; Madera M; Sheng Q; Tang H; Mechref Y; Novotny MV
Rapid Commun Mass Spectrom; 2008 Dec; 22(23):3823-34. PubMed ID: 18985620
[TBL] [Abstract][Full Text] [Related]
8. Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
Brusniak MY; Bodenmiller B; Campbell D; Cooke K; Eddes J; Garbutt A; Lau H; Letarte S; Mueller LN; Sharma V; Vitek O; Zhang N; Aebersold R; Watts JD
BMC Bioinformatics; 2008 Dec; 9():542. PubMed ID: 19087345
[TBL] [Abstract][Full Text] [Related]
9. Automated generic analysis tools for protein quantitation using stable isotope labeling.
Hsu WL; Sung TY
Methods Mol Biol; 2010; 604():257-72. PubMed ID: 20013376
[TBL] [Abstract][Full Text] [Related]
10. ICPLQuant - A software for non-isobaric isotopic labeling proteomics.
Brunner A; Keidel EM; Dosch D; Kellermann J; Lottspeich F
Proteomics; 2010 Jan; 10(2):315-26. PubMed ID: 19953540
[TBL] [Abstract][Full Text] [Related]
11. Qupe--a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
Albaum SP; Neuweger H; Fränzel B; Lange S; Mertens D; Trötschel C; Wolters D; Kalinowski J; Nattkemper TW; Goesmann A
Bioinformatics; 2009 Dec; 25(23):3128-34. PubMed ID: 19808875
[TBL] [Abstract][Full Text] [Related]
12. Label-free quantification and shotgun analysis of complex proteomes by one-dimensional SDS-PAGE/NanoLC-MS: evaluation for the large scale analysis of inflammatory human endothelial cells.
Gautier V; Mouton-Barbosa E; Bouyssié D; Delcourt N; Beau M; Girard JP; Cayrol C; Burlet-Schiltz O; Monsarrat B; Gonzalez de Peredo A
Mol Cell Proteomics; 2012 Aug; 11(8):527-39. PubMed ID: 22518033
[TBL] [Abstract][Full Text] [Related]
13. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT and tandem mass spectrometry to proteins copurifying with T cell lipid rafts.
von Haller PD; Yi E; Donohoe S; Vaughn K; Keller A; Nesvizhskii AI; Eng J; Li XJ; Goodlett DR; Aebersold R; Watts JD
Mol Cell Proteomics; 2003 Jul; 2(7):426-7. PubMed ID: 12832456
[TBL] [Abstract][Full Text] [Related]
14. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation.
von Haller PD; Yi E; Donohoe S; Vaughn K; Keller A; Nesvizhskii AI; Eng J; Li XJ; Goodlett DR; Aebersold R; Watts JD
Mol Cell Proteomics; 2003 Jul; 2(7):428-42. PubMed ID: 12832459
[TBL] [Abstract][Full Text] [Related]
15. MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.
Hartler J; Thallinger GG; Stocker G; Sturn A; Burkard TR; Körner E; Rader R; Schmidt A; Mechtler K; Trajanoski Z
BMC Bioinformatics; 2007 Jun; 8():197. PubMed ID: 17567892
[TBL] [Abstract][Full Text] [Related]
16. SILVER: an efficient tool for stable isotope labeling LC-MS data quantitative analysis with quality control methods.
Chang C; Zhang J; Han M; Ma J; Zhang W; Wu S; Liu K; Xie H; He F; Zhu Y
Bioinformatics; 2014 Feb; 30(4):586-7. PubMed ID: 24344194
[TBL] [Abstract][Full Text] [Related]
17. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
Audain E; Uszkoreit J; Sachsenberg T; Pfeuffer J; Liang X; Hermjakob H; Sanchez A; Eisenacher M; Reinert K; Tabb DL; Kohlbacher O; Perez-Riverol Y
J Proteomics; 2017 Jan; 150():170-182. PubMed ID: 27498275
[TBL] [Abstract][Full Text] [Related]
18. A practical guide to the ICPL_ESIQuant software for ICPL-based quantitative proteomics.
Brunner A; Kellermann J; Lottspeich F
Biochim Biophys Acta; 2014 Jan; 1844(1 Pt A):21-8. PubMed ID: 23454610
[TBL] [Abstract][Full Text] [Related]
19. Isotope coded protein label quantification of serum proteins--comparison with the label-free LC-MS and validation using the MRM approach.
Turtoi A; Mazzucchelli GD; De Pauw E
Talanta; 2010 Feb; 80(4):1487-95. PubMed ID: 20082806
[TBL] [Abstract][Full Text] [Related]
20. Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline.
Keller A; Shteynberg D
Methods Mol Biol; 2011; 694():169-89. PubMed ID: 21082435
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]