These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

169 related articles for article (PubMed ID: 17545201)

  • 1. MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape.
    Franklin J; Koehl P; Doniach S; Delarue M
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W477-82. PubMed ID: 17545201
    [TBL] [Abstract][Full Text] [Related]  

  • 2. How many dimensions are required to approximate the potential energy landscape of a model protein?
    Komatsuzaki T; Hoshino K; Matsunaga Y; Rylance GJ; Johnston RL; Wales DJ
    J Chem Phys; 2005 Feb; 122(8):84714. PubMed ID: 15836084
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MinActionPath2: path generation between different conformations of large macromolecular assemblies by action minimization.
    Koehl P; Navaza R; Tekpinar M; Delarue M
    Nucleic Acids Res; 2024 Jul; 52(W1):W256-W263. PubMed ID: 38783081
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Morphing methods to visualize coarse-grained protein dynamics.
    Weiss DR; Koehl P
    Methods Mol Biol; 2014; 1084():271-82. PubMed ID: 24061927
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Onsager-Machlup action-based path sampling and its combination with replica exchange for diffusive and multiple pathways.
    Fujisaki H; Shiga M; Kidera A
    J Chem Phys; 2010 Apr; 132(13):134101. PubMed ID: 20387915
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Can morphing methods predict intermediate structures?
    Weiss DR; Levitt M
    J Mol Biol; 2009 Jan; 385(2):665-74. PubMed ID: 18996395
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MISTRAL: a tool for energy-based multiple structural alignment of proteins.
    Micheletti C; Orland H
    Bioinformatics; 2009 Oct; 25(20):2663-9. PubMed ID: 19692555
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protein structure refinement by optimization.
    Carlsen M; Røgen P
    Proteins; 2015 Sep; 83(9):1616-24. PubMed ID: 26095680
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Minimum action transition paths connecting minima on an energy surface.
    Koehl P
    J Chem Phys; 2016 Nov; 145(18):184111. PubMed ID: 27846680
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Modeling protein thermodynamics and fluctuations at the mesoscale.
    Nakagawa N; Peyrard M
    Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Oct; 74(4 Pt 1):041916. PubMed ID: 17155105
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Coarse-grained free energy functions for studying protein conformational changes: a double-well network model.
    Chu JW; Voth GA
    Biophys J; 2007 Dec; 93(11):3860-71. PubMed ID: 17704151
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M; Yanover C
    Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Large loop conformation sampling using the activation relaxation technique, ART-nouveau method.
    St-Pierre JF; Mousseau N
    Proteins; 2012 Jul; 80(7):1883-94. PubMed ID: 22488731
    [TBL] [Abstract][Full Text] [Related]  

  • 16. iFold: a platform for interactive folding simulations of proteins.
    Sharma S; Ding F; Nie H; Watson D; Unnithan A; Lopp J; Pozefsky D; Dokholyan NV
    Bioinformatics; 2006 Nov; 22(21):2693-4. PubMed ID: 16940324
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Fast method for estimating the energy distribution of globular states of proteins.
    Cao HB; Wang CZ; Ho KM
    Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Aug; 72(2 Pt 1):021907. PubMed ID: 16196604
    [TBL] [Abstract][Full Text] [Related]  

  • 18. General multi-group macroscopic modeling for thermo-chemical non-equilibrium gas mixtures.
    Liu Y; Panesi M; Sahai A; Vinokur M
    J Chem Phys; 2015 Apr; 142(13):134109. PubMed ID: 25854230
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A new branch and bound method for the protein folding problem under the 2D-HP model.
    Hsieh SY; Lai DW
    IEEE Trans Nanobioscience; 2011 Jun; 10(2):69-75. PubMed ID: 21742572
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structural Transition States Explored With Minimalist Coarse Grained Models: Applications to Calmodulin.
    Delfino F; Porozov Y; Stepanov E; Tamazian G; Tozzini V
    Front Mol Biosci; 2019; 6():104. PubMed ID: 31750313
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.