233 related articles for article (PubMed ID: 17559516)
1. CyMATE: a new tool for methylation analysis of plant genomic DNA after bisulphite sequencing.
Hetzl J; Foerster AM; Raidl G; Mittelsten Scheid O
Plant J; 2007 Aug; 51(3):526-36. PubMed ID: 17559516
[TBL] [Abstract][Full Text] [Related]
2. Analysis of bisulfite sequencing data from plant DNA using CyMATE.
Foerster AM; Hetzl J; Müllner C; Mittelsten Scheid O
Methods Mol Biol; 2010; 631():13-22. PubMed ID: 20204864
[TBL] [Abstract][Full Text] [Related]
3. The CHH motif in sugar beet satellite DNA: a modulator for cytosine methylation.
Zakrzewski F; Schubert V; Viehoever P; Minoche AE; Dohm JC; Himmelbauer H; Weisshaar B; Schmidt T
Plant J; 2014 Jun; 78(6):937-50. PubMed ID: 24661787
[TBL] [Abstract][Full Text] [Related]
4. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.
Cokus SJ; Feng S; Zhang X; Chen Z; Merriman B; Haudenschild CD; Pradhan S; Nelson SF; Pellegrini M; Jacobsen SE
Nature; 2008 Mar; 452(7184):215-9. PubMed ID: 18278030
[TBL] [Abstract][Full Text] [Related]
5. Analysis of DNA methylation in plants by bisulfite sequencing.
Foerster AM; Mittelsten Scheid O
Methods Mol Biol; 2010; 631():1-11. PubMed ID: 20204863
[TBL] [Abstract][Full Text] [Related]
6. Cooperative activity of DNA methyltransferases for maintenance of symmetrical and non-symmetrical cytosine methylation in Arabidopsis thaliana.
Singh A; Zubko E; Meyer P
Plant J; 2008 Dec; 56(5):814-23. PubMed ID: 18665914
[TBL] [Abstract][Full Text] [Related]
7. Effects of ploidy variation on promoter DNA methylation and gene expression in rice (Oryza sativa L.).
Zhang H; Ali A; Hou F; Wu T; Guo D; Zeng X; Wang F; Zhao H; Chen X; Xu P; Wu X
BMC Plant Biol; 2018 Nov; 18(1):314. PubMed ID: 30497392
[TBL] [Abstract][Full Text] [Related]
8. Kismeth: analyzer of plant methylation states through bisulfite sequencing.
Gruntman E; Qi Y; Slotkin RK; Roeder T; Martienssen RA; Sachidanandam R
BMC Bioinformatics; 2008 Sep; 9():371. PubMed ID: 18786255
[TBL] [Abstract][Full Text] [Related]
9. DNA methylation: bisulphite modification and analysis.
Patterson K; Molloy L; Qu W; Clark S
J Vis Exp; 2011 Oct; (56):. PubMed ID: 22042230
[TBL] [Abstract][Full Text] [Related]
10. Bisulphite sequencing of plant genomic DNA.
Aichinger E; Köhler C
Methods Mol Biol; 2010; 655():433-43. PubMed ID: 20734278
[TBL] [Abstract][Full Text] [Related]
11. Transgenerational epigenetic instability is a source of novel methylation variants.
Schmitz RJ; Schultz MD; Lewsey MG; O'Malley RC; Urich MA; Libiger O; Schork NJ; Ecker JR
Science; 2011 Oct; 334(6054):369-73. PubMed ID: 21921155
[TBL] [Abstract][Full Text] [Related]
12. Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning.
Ni P; Huang N; Nie F; Zhang J; Zhang Z; Wu B; Bai L; Liu W; Xiao CL; Luo F; Wang J
Nat Commun; 2021 Oct; 12(1):5976. PubMed ID: 34645826
[TBL] [Abstract][Full Text] [Related]
13. Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in
Zhang Y; Harris CJ; Liu Q; Liu W; Ausin I; Long Y; Xiao L; Feng L; Chen X; Xie Y; Chen X; Zhan L; Feng S; Li JJ; Wang H; Zhai J; Jacobsen SE
Proc Natl Acad Sci U S A; 2018 Jan; 115(5):E1069-E1074. PubMed ID: 29339507
[TBL] [Abstract][Full Text] [Related]
14. Computational Analysis of Genome-Wide ARGONAUTE-Dependent DNA Methylation in Plants.
Tang K; Duan CG; Zhang H; Zhu JK
Methods Mol Biol; 2017; 1640():219-225. PubMed ID: 28608346
[TBL] [Abstract][Full Text] [Related]
15. Determining the conservation of DNA methylation in Arabidopsis.
Widman N; Jacobsen SE; Pellegrini M
Epigenetics; 2009 Feb; 4(2):119-24. PubMed ID: 19384058
[TBL] [Abstract][Full Text] [Related]
16. Effective, homogeneous and transient interference with cytosine methylation in plant genomic DNA by zebularine.
Baubec T; Pecinka A; Rozhon W; Mittelsten Scheid O
Plant J; 2009 Feb; 57(3):542-54. PubMed ID: 18826433
[TBL] [Abstract][Full Text] [Related]
17. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes.
Tran RK; Henikoff JG; Zilberman D; Ditt RF; Jacobsen SE; Henikoff S
Curr Biol; 2005 Jan; 15(2):154-9. PubMed ID: 15668172
[TBL] [Abstract][Full Text] [Related]
18. Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation.
Mathieu O; Reinders J; Caikovski M; Smathajitt C; Paszkowski J
Cell; 2007 Sep; 130(5):851-62. PubMed ID: 17803908
[TBL] [Abstract][Full Text] [Related]
19. Profiling DNA Methylation Using Bisulfite Sequencing (BS-Seq).
Chen YR; Yu S; Zhong S
Methods Mol Biol; 2018; 1675():31-43. PubMed ID: 29052183
[TBL] [Abstract][Full Text] [Related]
20. Genome-wide bisulphite-sequencing reveals organ-specific methylation patterns in chickpea.
Bhatia H; Khemka N; Jain M; Garg R
Sci Rep; 2018 Jun; 8(1):9704. PubMed ID: 29946142
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]