177 related articles for article (PubMed ID: 17568001)
1. Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs).
Ruan Y; Ooi HS; Choo SW; Chiu KP; Zhao XD; Srinivasan KG; Yao F; Choo CY; Liu J; Ariyaratne P; Bin WG; Kuznetsov VA; Shahab A; Sung WK; Bourque G; Palanisamy N; Wei CL
Genome Res; 2007 Jun; 17(6):828-38. PubMed ID: 17568001
[TBL] [Abstract][Full Text] [Related]
2. Cloning of BCAS3 (17q23) and BCAS4 (20q13) genes that undergo amplification, overexpression, and fusion in breast cancer.
Bärlund M; Monni O; Weaver JD; Kauraniemi P; Sauter G; Heiskanen M; Kallioniemi OP; Kallioniemi A
Genes Chromosomes Cancer; 2002 Dec; 35(4):311-7. PubMed ID: 12378525
[TBL] [Abstract][Full Text] [Related]
3. PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data.
Chiu KP; Wong CH; Chen Q; Ariyaratne P; Ooi HS; Wei CL; Sung WK; Ruan Y
BMC Bioinformatics; 2006 Aug; 7():390. PubMed ID: 16934139
[TBL] [Abstract][Full Text] [Related]
4. The der(17)t(X;17)(p11;q25) of human alveolar soft part sarcoma fuses the TFE3 transcription factor gene to ASPL, a novel gene at 17q25.
Ladanyi M; Lui MY; Antonescu CR; Krause-Boehm A; Meindl A; Argani P; Healey JH; Ueda T; Yoshikawa H; Meloni-Ehrig A; Sorensen PH; Mertens F; Mandahl N; van den Berghe H; Sciot R; Dal Cin P; Bridge J
Oncogene; 2001 Jan; 20(1):48-57. PubMed ID: 11244503
[TBL] [Abstract][Full Text] [Related]
5. Identification and characterization of JMJD2 family genes in silico.
Katoh M; Katoh M
Int J Oncol; 2004 Jun; 24(6):1623-8. PubMed ID: 15138608
[TBL] [Abstract][Full Text] [Related]
6. [DNA sequence analysis of a novel variate type of PML/RAR alpha fusion gene transcript].
Wang GP; Chen FP; Jian ZF
Hunan Yi Ke Da Xue Xue Bao; 2001 Dec; 26(6):581-2. PubMed ID: 12536551
[No Abstract] [Full Text] [Related]
7. Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes.
Ng P; Tan JJ; Ooi HS; Lee YL; Chiu KP; Fullwood MJ; Srinivasan KG; Perbost C; Du L; Sung WK; Wei CL; Ruan Y
Nucleic Acids Res; 2006 Jul; 34(12):e84. PubMed ID: 16840528
[TBL] [Abstract][Full Text] [Related]
8. Transcriptional consequences of genomic structural aberrations in breast cancer.
Inaki K; Hillmer AM; Ukil L; Yao F; Woo XY; Vardy LA; Zawack KF; Lee CW; Ariyaratne PN; Chan YS; Desai KV; Bergh J; Hall P; Putti TC; Ong WL; Shahab A; Cacheux-Rataboul V; Karuturi RK; Sung WK; Ruan X; Bourque G; Ruan Y; Liu ET
Genome Res; 2011 May; 21(5):676-87. PubMed ID: 21467264
[TBL] [Abstract][Full Text] [Related]
9. Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome.
Wu JQ; Du J; Rozowsky J; Zhang Z; Urban AE; Euskirchen G; Weissman S; Gerstein M; Snyder M
Genome Biol; 2008 Jan; 9(1):R3. PubMed ID: 18173853
[TBL] [Abstract][Full Text] [Related]
10. Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation.
Ng P; Wei CL; Sung WK; Chiu KP; Lipovich L; Ang CC; Gupta S; Shahab A; Ridwan A; Wong CH; Liu ET; Ruan Y
Nat Methods; 2005 Feb; 2(2):105-11. PubMed ID: 15782207
[TBL] [Abstract][Full Text] [Related]
11. A novel cryptic translocation t(12;17)(p13;p12-p13) in a secondary acute myeloid leukemia results in a fusion of the ETV6 gene and the antisense strand of the PER1 gene.
Murga Penas EM; Cools J; Algenstaedt P; Hinz K; Seeger D; Schafhausen P; Schilling G; Marynen P; Hossfeld DK; Dierlamm J
Genes Chromosomes Cancer; 2003 May; 37(1):79-83. PubMed ID: 12661008
[TBL] [Abstract][Full Text] [Related]
12. Identification of Multiple Forms of RNA Transcripts Associated with Human-Specific Retrotransposed Gene Copies.
Mori S; Hayashi M; Inagaki S; Oshima T; Tateishi K; Fujii H; Suzuki S
Genome Biol Evol; 2016 Aug; 8(8):2288-96. PubMed ID: 27389689
[TBL] [Abstract][Full Text] [Related]
13. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution.
Cheng J; Kapranov P; Drenkow J; Dike S; Brubaker S; Patel S; Long J; Stern D; Tammana H; Helt G; Sementchenko V; Piccolboni A; Bekiranov S; Bailey DK; Ganesh M; Ghosh S; Bell I; Gerhard DS; Gingeras TR
Science; 2005 May; 308(5725):1149-54. PubMed ID: 15790807
[TBL] [Abstract][Full Text] [Related]
14. A BACH2-BCL2L1 fusion gene resulting from a t(6;20)(q15;q11.2) chromosomal translocation in the lymphoma cell line BLUE-1.
Türkmen S; Riehn M; Klopocki E; Molkentin M; Reinhardt R; Burmeister T
Genes Chromosomes Cancer; 2011 Jun; 50(6):389-96. PubMed ID: 21412927
[TBL] [Abstract][Full Text] [Related]
15. Human stearoyl-CoA desaturase: alternative transcripts generated from a single gene by usage of tandem polyadenylation sites.
Zhang L; Ge L; Parimoo S; Stenn K; Prouty SM
Biochem J; 1999 May; 340 ( Pt 1)(Pt 1):255-64. PubMed ID: 10229681
[TBL] [Abstract][Full Text] [Related]
16. Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses.
Fullwood MJ; Wei CL; Liu ET; Ruan Y
Genome Res; 2009 Apr; 19(4):521-32. PubMed ID: 19339662
[TBL] [Abstract][Full Text] [Related]
17. Molecular genetic characterization of the EWS/ATF1 fusion gene in clear cell sarcoma of tendons and aponeuroses.
Panagopoulos I; Mertens F; Dêbiec-Rychter M; Isaksson M; Limon J; Kardas I; Domanski HA; Sciot R; Perek D; Crnalic S; Larsson O; Mandahl N
Int J Cancer; 2002 Jun; 99(4):560-7. PubMed ID: 11992546
[TBL] [Abstract][Full Text] [Related]
18. Establishment and characterization of a renal cell carcinoma cell line (FU-UR-1) with the reciprocal ASPL-TFE3 fusion transcript.
Ishiguro M; Iwasaki H; Ohjimi Y; Kaneko Y
Oncol Rep; 2004 Jun; 11(6):1169-75. PubMed ID: 15138551
[TBL] [Abstract][Full Text] [Related]
19. Genomic fossils as a snapshot of the human transcriptome.
Shemesh R; Novik A; Edelheit S; Sorek R
Proc Natl Acad Sci U S A; 2006 Jan; 103(5):1364-9. PubMed ID: 16432206
[TBL] [Abstract][Full Text] [Related]
20. Retrotransposons influence the mouse transcriptome: implication for the divergence of genetic traits.
Horie K; Saito ES; Keng VW; Ikeda R; Ishihara H; Takeda J
Genetics; 2007 Jun; 176(2):815-27. PubMed ID: 17435252
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
